WormBase Tree Display for Variation: WBVar00143101
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WBVar00143101 | Evidence | Paper_evidence | WBPaper00031010 | |||||
---|---|---|---|---|---|---|---|---|
Name | Public_name | e306 | ||||||
Other_name | CE36501:p.Trp184Ter | |||||||
T07A5.2.1:c.552G>A | ||||||||
HGVSg | CHROMOSOME_III:g.10315933C>T | |||||||
Sequence_details | SMap | S_parent | Sequence | T07A5 | ||||
Flanking_sequences | acggaaagttcgtgaccaggacgtcgagtg | ggttattgcttcgatgtacatctaaacgcg | ||||||
Mapping_target | T07A5 | |||||||
Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00031010 | |||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00004144 | |||||||
WBStrain00027163 | ||||||||
WBStrain00027198 | ||||||||
WBStrain00027199 | ||||||||
Laboratory | CB | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00006785 | ||||||
Transcript | T07A5.2.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | |||||||
HGVSc | T07A5.2.1:c.552G>A | |||||||
HGVSp | CE36501:p.Trp184Ter | |||||||
cDNA_position | 584 | |||||||
CDS_position | 552 | |||||||
Protein_position | 184 | |||||||
Exon_number | 4/6 | |||||||
Codon_change | tgG/tgA | |||||||
Amino_acid_change | W/* | |||||||
Interactor | WBInteraction000503020 | |||||||
Isolation | Mutagen | EMS | Paper_evidence | WBPaper00031010 | ||||
Genetics | Interpolated_map_position | III | 2.3086 | |||||
Mapping_data | In_2_point | 56 | ||||||
75 | ||||||||
In_multi_point (20) | ||||||||
In_pos_neg_data | 650 | |||||||
1619 | ||||||||
2722 | ||||||||
3243 | ||||||||
5726 | ||||||||
5734 | ||||||||
Description | Phenotype | WBPhenotype:0000002 | Person_evidence | WBPerson261 | ||||
Curator_confirmed | WBPerson712 | |||||||
Remark | weak kinker | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
Ease_of_scoring | ES3_Easy_to_score | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000032 | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | Animals are severely debilitated at 25 C. | Paper_evidence | WBPaper00000484 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Recessive | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Temperature_sensitive | Heat_sensitive | 25 | Paper_evidence | WBPaper00000484 | ||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0000421 | Paper_evidence | WBPaper00000484 | ||||||
WBPaper00035548 | ||||||||
Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson2021 | |||||||
WBPerson712 | ||||||||
Remark | resistant to 1 mM levamisole; extracts lack levamisole binding. | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
Recessive | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Affected_by | Molecule | WBMol:00004019 | Paper_evidence | WBPaper00000484 | ||||
Curator_confirmed | WBPerson2021 | |||||||
Phenotype_assay | Treatment | 1mM levamisole | Paper_evidence | WBPaper00000484 | ||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0000519 | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | extracts lack levamisole binding | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000554 | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | sensitive to hypoosmotic shock | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000643 | Paper_evidence | WBPaper00000031 | ||||||
WBPaper00000484 | ||||||||
WBPaper00035548 | ||||||||
Curator_confirmed | WBPerson48 | |||||||
WBPerson2021 | ||||||||
WBPerson712 | ||||||||
Remark | No backward motion in L1 larvae. Newly hatched larvae can barely move forward. Adults have a mild Unc defect where the mutants move forward in a slow decayed sine wave. | Paper_evidence | WBPaper00000484 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Recessive | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
EQ_annotations | Life_stage (2) | |||||||
WBPhenotype:0000646 | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | slow but fairly active | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0001852 | Paper_evidence | WBPaper00035074 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | Mutants are resistant to tribendimidine | Paper_evidence | WBPaper00035074 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Phenotype_not_observed | WBPhenotype:0000315 | Paper_evidence | WBPaper00000484 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Recessive | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0000478 | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | Mutants tend to remain within the borders of bacterial lawns as does the wild-type. | Paper_evidence | WBPaper00000484 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Recessive | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0001084 | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | Attraction to sodium chloride is normal (See methods). | Paper_evidence | WBPaper00000484 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Recessive | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0001414 | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Recessive | Paper_evidence | WBPaper00000484 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Reference (4) | ||||||||
Method | Substitution_allele |