WormBase Tree Display for Variation: WBVar00250781

WBVar00250781 Name: Public_name: tm1817
    Other_name: D2030.9b.1:c.677+25_889-128del
      D2030.9a.2:c.800+25_1012-128del
      D2030.9c.1:c.800+25_1012-128del
      D2030.9e.1:c.581+25_793-128del
      D2030.9d.1:c.581+25_793-128del
      D2030.9a.1:c.800+25_1012-128del
    HGVSg: CHROMOSOME_I:g.7599392_7600026del
  Sequence_details: SMap: S_parent: Sequence: D2030
    Flanking_sequences: aagagagtgagtacatttcacagcaaaaaa atttattcaaagtttctcaacatgacattg
    Mapping_target: D2030
    Source_location: 7 CHROMOSOME_I 7599391 7600027 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1817_external
      tm1817_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00055405
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1817
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00008419
    Transcript: D2030.9c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: D2030.9c.1:c.800+25_1012-128del
        Intron_number: 6-7/11
        Exon_number: 7/12
      D2030.9d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: D2030.9d.1:c.581+25_793-128del
        Intron_number: 3-4/7
        Exon_number: 4/8
      D2030.9a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: D2030.9a.1:c.800+25_1012-128del
        Intron_number: 6-7/11
        Exon_number: 7/12
      D2030.9e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: D2030.9e.1:c.581+25_793-128del
        Intron_number: 3-4/7
        Exon_number: 4/8
      D2030.9b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: D2030.9b.1:c.677+25_889-128del
        Intron_number: 5-6/10
        Exon_number: 6/11
      D2030.9a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: D2030.9a.2:c.800+25_1012-128del
        Intron_number: 6-7/11
        Exon_number: 7/12
    Interactor (12)
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype (13)
    Phenotype_not_observed: WBPhenotype:0000030 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. C.P. Hunter: no growth defects at 20C Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000145 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. C.P. Hunter: no fertility defects at 20C Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Reference: WBPaper00042215
    WBPaper00032980
    WBPaper00046904
    WBPaper00053621
  Remark: 34358/34359-34993/34994 (635 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele