WormBase Tree Display for Variation: WBVar02020217
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WBVar02020217 | Name | Public_name | WBVar02020217 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00748725 | |||||||
Y54G2A.5c.1:c.109_111del | ||||||||
CE48099:p.Asp72del | ||||||||
CE48813:p.Asp38del | ||||||||
CE33889:p.Asp56del | ||||||||
Y54G2A.5b.1:c.163_165del | ||||||||
Y54G2A.5a.1:c.211_213del | ||||||||
Y54G2A.17a.1:c.-39+2872_-39+2874del | ||||||||
HGVSg | CHROMOSOME_IV:g.2887526_2887528del | |||||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
Flanking_sequences | ATGGGAATGTTGGATGGCTCCTCGGCGATG | GATGGTGTGGAGAAGCCGAAGGTGATTGAT | ||||||
Mapping_target | Y54G2A | |||||||
Source_location | 225 | CHROMOSOME_IV | 2887524 | 2887526 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Deletion | |||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00021871 | ||||||
WBGene00021882 | ||||||||
Transcript | Y54G2A.5b.1 | VEP_consequence | inframe_deletion | |||||
VEP_impact | MODERATE | |||||||
HGVSc | Y54G2A.5b.1:c.163_165del | |||||||
HGVSp | CE33889:p.Asp56del | |||||||
cDNA_position | 260-262 | |||||||
CDS_position | 163-165 | |||||||
Protein_position | 55 | |||||||
Exon_number | 3/6 | |||||||
Codon_change | GAT/- | |||||||
Amino_acid_change | D/- | |||||||
Y54G2A.5c.1 | VEP_consequence | inframe_deletion | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | Y54G2A.5c.1:c.109_111del | |||||||
HGVSp | CE48813:p.Asp38del | |||||||
cDNA_position | 109-111 | |||||||
CDS_position | 109-111 | |||||||
Protein_position | 37 | |||||||
Exon_number | 1/3 | |||||||
Codon_change | GAT/- | |||||||
Amino_acid_change | D/- | |||||||
Y54G2A.17a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.17a.1:c.-39+2872_-39+2874del | |||||||
Intron_number | 1/8 | |||||||
Y54G2A.5a.1 | VEP_consequence | inframe_deletion | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | Y54G2A.5a.1:c.211_213del | |||||||
HGVSp | CE48099:p.Asp72del | |||||||
cDNA_position | 227-229 | |||||||
CDS_position | 211-213 | |||||||
Protein_position | 71 | |||||||
Exon_number | 3/6 | |||||||
Codon_change | GAT/- | |||||||
Amino_acid_change | D/- | |||||||
Method | WGS_Flibotte |