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WormBase Tree Display for Variation: WBVar02020217

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Name Class

WBVar02020217NamePublic_nameWBVar02020217
Other_namecewivar00748725
Y54G2A.5c.1:c.109_111del
CE48099:p.Asp72del
CE48813:p.Asp38del
CE33889:p.Asp56del
Y54G2A.5b.1:c.163_165del
Y54G2A.5a.1:c.211_213del
Y54G2A.17a.1:c.-39+2872_-39+2874del
HGVSgCHROMOSOME_IV:g.2887526_2887528del
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencesATGGGAATGTTGGATGGCTCCTCGGCGATGGATGGTGTGGAGAAGCCGAAGGTGATTGAT
Mapping_targetY54G2A
Source_location225CHROMOSOME_IV28875242887526From_analysisMillion_mutation_project_reanalysis
Type_of_mutationDeletion
SeqStatusSequenced
Variation_typeNatural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00022930From_analysisMillion_mutation_project_reanalysis
WBStrain00023139From_analysisMillion_mutation_project_reanalysis
LaboratoryVC
AnalysisMillion_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00021871
WBGene00021882
TranscriptY54G2A.5b.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScY54G2A.5b.1:c.163_165del
HGVSpCE33889:p.Asp56del
cDNA_position260-262
CDS_position163-165
Protein_position55
Exon_number3/6
Codon_changeGAT/-
Amino_acid_changeD/-
Y54G2A.5c.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScY54G2A.5c.1:c.109_111del
HGVSpCE48813:p.Asp38del
cDNA_position109-111
CDS_position109-111
Protein_position37
Exon_number1/3
Codon_changeGAT/-
Amino_acid_changeD/-
Y54G2A.17a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17a.1:c.-39+2872_-39+2874del
Intron_number1/8
Y54G2A.5a.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScY54G2A.5a.1:c.211_213del
HGVSpCE48099:p.Asp72del
cDNA_position227-229
CDS_position211-213
Protein_position71
Exon_number3/6
Codon_changeGAT/-
Amino_acid_changeD/-
MethodWGS_Flibotte