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WormBase Tree Display for Gene: WBGene00104188

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Name Class

WBGene00104188SMapS_parentSequencePPA_ChrV
IdentityVersion5
NameCGC_namePpa-sqv-4From_analysisInferred_from_orthology
Sequence_namePPA14634
Molecular_namePPA14634
PPA14634.1
PP64002
Other_nameGENEPREDICTION_SNAP300000071115
GENEPREDICTION_SNAP300000071116
GENEPREDICTION_SNAP300000071117
UMM-S632-0.4Person_evidenceWBPerson606
Ppa-unc-122Inferred_automaticallyfrom gene merge
Public_namePpa-sqv-4
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:05WBPerson4055EventImportedfrom NGASP
217 Nov 2017 15:19:42WBPerson4055Name_changeCGC_namePpa-unc-122
324 Nov 2017 09:46:50WBPerson4055EventAcquires_mergeWBGene00104189
424 Nov 2017 09:46:50WBPerson4055EventAcquires_mergeWBGene00104190
520 Mar 2018 10:26:11WBPerson4025Name_changeCGC_namePpa-sqv-4
Other_namePpa-unc-122
Acquires_mergeWBGene00104189
WBGene00104190
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsqv
RNASeq_FPKMWBls:000003217.1051From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010111.6269From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
17.1051From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
17.7757From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
GO_annotation00179804
00179805
00179806
OrthologWBGene00005022Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00006845Caenorhabditis elegansFrom_analysisInparanoid_8
WBGene00031223Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00038898Caenorhabditis briggsaeFrom_analysisInparanoid_8
WBGene00060887Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00065019Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00146289Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00136059Caenorhabditis japonicaFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00152160Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00132561Caenorhabditis japonicaFrom_analysisInparanoid_8
WBGene00190956Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00223956Brugia malayiFrom_analysisWormBase-Compara
WBGene00238318Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g10386Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5712Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g5714Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g15965Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8263Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g13383Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g22983Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g9262Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g22103Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26252Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g27448Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g9217Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1520Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00265.g8135Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_II.g7136Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g19398Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15538Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00391.g10621Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11815Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_016462Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12065Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g15849Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g8785Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50298000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g15579Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00256188Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00261974Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00294880Trichuris murisFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable NAD binding activity and UDP-glucose 6-dehydrogenase activity. Is an ortholog of C. elegans sqv-4. In C. elegans, sqv-4 is involved in several processes, including egg-laying behavior; glycosaminoglycan biosynthetic process; and vulval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA14634
Corresponding_transcriptPPA14634.1
Other_sequenceFG974196.1
Hbac_isotig02028
CJC03806_1
TX00701
CJC14375_1
AE03408
Oden_isotig21653
Acan_isotig20254
Dviv_isotig23408
JI178211.1
PPC11305_1
MHC01905_1
TCC00080_1
JI173797.1
Acan_isotig04607
XI00546
PPC08901_1
MI04489
CR00546
JI169373.1
CR00053
Oden_isotig20407
Acan_isotig19592
TSC10168_1
JI223597.1
Tcir_isotig27968
Oden_isotig05831
Tcir_isotig18988
MA02243
Hbac_isotig07556
HBC12720_1
MI01838
JI479125.1
Dviv_isotig22457
MAC01577_1
CBC00319_1
JI172100.1
Name_isotig03513
ES569949.1
PPC13673_1
CSC00885_1
Oden_isotig05830
AYC03376_1
MIC02231_1
TX00699
MH04468
AS10759
Acan_isotig04606
FD514358.1
Acan_isotig06625
JI243196.1
Acan_isotig17984
XIC02684_1
ASC02701_1
CRC01253_1
Experimental_infoMicroarray_resultsGPL14372_Probes_53857
GPL14372_Probes_53858
GPL14372_Probes_53859
GPL14372_Probes_53860
GPL14372_Probes_53861
GPL14372_Probes_53862
GPL14372_Probes_53863
GPL14372_Probes_53864
GPL14372_Probes_53865
GPL14372_Probes_53866
GPL14372_Probes_53867
GPL14372_Probes_53868
GPL14372_Probes_53869
GPL14372_Probes_53870
GPL14372_Probes_53871
GPL14372_Probes_53872
GPL14372_Probes_53873
GPL14372_Probes_53874
GPL14372_Probes_53875
GPL14372_Probes_53876
GPL14372_Probes_53877
Expression_clusterWBPaper00041207:PP_dauer_up
WBPaper00041466:PP_germline-ablation_regulated
WBPaper00041606:PP_X.nematophila_regulated
MethodGene