WormBase Tree Display for Variation: WBVar00090811
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WBVar00090811 | Evidence | Paper_evidence | WBPaper00031335 | |||||
---|---|---|---|---|---|---|---|---|
Name | Public_name | n4255 | ||||||
Other_name | C29E6.2b.1:c.1652-1639_1652-1429del | |||||||
C29E6.2a.1:c.1655-1639_1655-1429del | ||||||||
HGVSg | CHROMOSOME_IV:g.11871612_11871822del | |||||||
Sequence_details | SMap | S_parent | Sequence | C29E6 | ||||
Flanking_sequences | GTCGCTCATTGATTCACATCCATTTTGAG | GCCATGATGGGGCTCCCATTGAAT | ||||||
Mapping_target | C29E6 | |||||||
Type_of_mutation | Deletion | |||||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00027428 | |||||||
WBStrain00034639 | ||||||||
WBStrain00040276 | ||||||||
Component_of_genotype | WBGenotype00000014 | |||||||
Laboratory | MT | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00195534 | ||||||
WBGene00003319 | ||||||||
WBGene00007801 | ||||||||
Transcript | C29E6.8 | VEP_consequence | transcript_ablation | |||||
VEP_impact | HIGH | |||||||
Exon_number | 1/1 | |||||||
C29E6.2a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | C29E6.2a.1:c.1655-1639_1655-1429del | |||||||
Intron_number | 6/12 | |||||||
C29E6.2b.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | C29E6.2b.1:c.1652-1639_1652-1429del | |||||||
Intron_number | 6/12 | |||||||
C29E6.7 | ||||||||
Interactor (46) | ||||||||
Isolation | Mutagen | UV-TMP | Paper_evidence | WBPaper00031335 | ||||
Genetics | Interpolated_map_position | IV | 5.35403 | |||||
Description | Phenotype (15) | |||||||
Phenotype_not_observed | WBPhenotype:0000006 | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | non-Egl | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0000207 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | Defecation cycle is normal | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0000634 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | Pumping is normal | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0000637 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | No defects in dauer formation | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0000643 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | non-Unc | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0001233 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | Cell number and nuclear staining is normal | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Phenotype_assay | Treatment | DAPI staining | Paper_evidence | WBPaper00031335 | ||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0002535 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | non-Dyf | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
EQ_annotations | Anatomy_term (7) | |||||||
Phenotype_assay | Treatment | DiO staining | Paper_evidence | WBPaper00031335 | ||||
Curator_confirmed | WBPerson2021 | |||||||
Disease_info | Models_disease | DOID:5688 | ||||||
Models_disease_in_annotation | WBDOannot00000257 | |||||||
Reference | WBPaper00041652 | |||||||
WBPaper00043908 | ||||||||
WBPaper00031335 | ||||||||
Method | Deletion_allele |