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WormBase Tree Display for Variation: WBVar00090811

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Name Class

WBVar00090811EvidencePaper_evidenceWBPaper00031335
NamePublic_namen4255
Other_nameC29E6.2b.1:c.1652-1639_1652-1429del
C29E6.2a.1:c.1655-1639_1655-1429del
HGVSgCHROMOSOME_IV:g.11871612_11871822del
Sequence_detailsSMapS_parentSequenceC29E6
Flanking_sequencesGTCGCTCATTGATTCACATCCATTTTGAGGCCATGATGGGGCTCCCATTGAAT
Mapping_targetC29E6
Type_of_mutationDeletion
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00027428
WBStrain00034639
WBStrain00040276
Component_of_genotypeWBGenotype00000014
LaboratoryMT
StatusLive
AffectsGeneWBGene00195534
WBGene00003319
WBGene00007801
TranscriptC29E6.8VEP_consequencetranscript_ablation
VEP_impactHIGH
Exon_number1/1
C29E6.2a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC29E6.2a.1:c.1655-1639_1655-1429del
Intron_number6/12
C29E6.2b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC29E6.2b.1:c.1652-1639_1652-1429del
Intron_number6/12
C29E6.7
InteractorWBInteraction000504275
WBInteraction000504276
WBInteraction000504277
WBInteraction000504278
WBInteraction000504279
WBInteraction000504280
WBInteraction000504281
WBInteraction000504282
WBInteraction000504283
WBInteraction000504284
WBInteraction000504285
WBInteraction000504286
WBInteraction000504287
WBInteraction000504288
WBInteraction000504289
WBInteraction000504290
WBInteraction000504291
WBInteraction000504292
WBInteraction000504293
WBInteraction000504294
WBInteraction000504295
WBInteraction000504296
WBInteraction000504297
WBInteraction000504298
WBInteraction000504299
WBInteraction000504300
WBInteraction000504301
WBInteraction000504302
WBInteraction000504303
WBInteraction000504304
WBInteraction000504305
WBInteraction000504306
WBInteraction000504307
WBInteraction000504308
WBInteraction000504309
WBInteraction000504310
WBInteraction000504311
WBInteraction000504312
WBInteraction000504313
WBInteraction000504314
WBInteraction000504315
WBInteraction000504316
WBInteraction000504317
WBInteraction000504318
WBInteraction000504319
WBInteraction000504320
IsolationMutagenUV-TMPPaper_evidenceWBPaper00031335
GeneticsInterpolated_map_positionIV5.35403
DescriptionPhenotypeWBPhenotype:0000022Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0000542Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0001171Paper_evidenceWBPaper00041652
Curator_confirmedWBPerson19617
RemarkAs shown in Figure 2B, the median life span of mir-124(n4255) worms was significantly decreased by 15% (7.7 days versus 9.0 days) compared to the wild type animals (log-rank test: P = 5.4 10-9).Paper_evidenceWBPaper00041652
Curator_confirmedWBPerson19617
WBPhenotype:0001575Paper_evidenceWBPaper00041652
Curator_confirmedWBPerson19617
Remarkmir-124(n4255) animals exhibited a 52% decrease in the overall ATP levels compared to the wild type strain (P = 0.0409). (Figure 3B)Paper_evidenceWBPaper00041652
Curator_confirmedWBPerson19617
WBPhenotype:0002238Paper_evidenceWBPaper00041652
Curator_confirmedWBPerson19617
Remarkmir-124(n4255) led to a significant increase in overall reactive oxygen species (ROS) levels (16% increase; P = 0.0442).Paper_evidenceWBPaper00041652
Curator_confirmedWBPerson19617
WBPhenotype:0002284Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002289Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002296Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002300Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002301Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002314Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002321Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002344Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0004022Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0004023Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
Phenotype_not_observedWBPhenotype:0000006Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Remarknon-EglPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBPhenotype:0000207Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
RemarkDefecation cycle is normalPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBPhenotype:0000634Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
RemarkPumping is normalPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBPhenotype:0000637Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
RemarkNo defects in dauer formationPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBPhenotype:0000643Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Remarknon-UncPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBPhenotype:0001233Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
RemarkCell number and nuclear staining is normalPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Phenotype_assayTreatmentDAPI stainingPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBPhenotype:0002535Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Remarknon-DyfPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
EQ_annotationsAnatomy_termWBbt:0005666PATO:0000460Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBbt:0005667PATO:0000460Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBbt:0005668PATO:0000460Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBbt:0005665PATO:0000460Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBbt:0005661PATO:0000460Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBbt:0007807PATO:0000460Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBbt:0007808PATO:0000460Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Phenotype_assayTreatmentDiO stainingPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Disease_infoModels_diseaseDOID:5688
Models_disease_in_annotationWBDOannot00000257
ReferenceWBPaper00041652
WBPaper00043908
WBPaper00031335
MethodDeletion_allele