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WormBase Tree Display for Gene: WBGene00087869

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Name Class

WBGene00087869SMapS_parentSequencecb25.fpc4069d
IdentityVersion3
NameCGC_nameCbr-rpap-3From_analysisInferred_from_orthology
Sequence_nameCBG26455
Molecular_nameCBG26455
CBG26455.1
CBP35111
Other_nameCBG_26455Accession_evidenceNDBHE600976
Public_nameCbr-rpap-3
DB_infoDatabaseNDBlocus_tagCBG_26455
SpeciesCaenorhabditis briggsae
HistoryVersion_change123 Jul 2008 11:20:50WBPerson1847EventImportednGASP new gene
211 Oct 2017 17:05:22WBPerson1983Name_changeCGC_nameCbr-rpap-3
322 Dec 2017 13:03:49WBPerson1983Name_changeCGC_nameCbr-rpap-3
Other_nameCbr-rpap-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrpap
RNASeq_FPKMWBls:000000211.0733From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
7.35663From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
9.4499From_analysisRNASeq.briggsae.WBls:0000002.control_mean
9.91977From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
8.09822From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
9.009From_analysisRNASeq.briggsae.WBls:0000002.control_median
9.11198From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000311.177From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
7.54322From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
9.36011From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
10.4906From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
9.73694From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000044.34321From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
4.75864From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
5.17406From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
4.27372From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
4.57729From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
4.94155From_analysisRNASeq.briggsae.WBls:0000004.control_mean
6.33945From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.087592From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2.08From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.42903From_analysisRNASeq.briggsae.WBls:0000027.control_mean
8.11951From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.40346From_analysisRNASeq.briggsae.WBls:0000027.control_median
3.7535From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.72691From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000357.18759From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.7283From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
4.79753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
7.79792From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
8.17265From_analysisRNASeq.briggsae.WBls:0000038.control_mean
8.58239From_analysisRNASeq.briggsae.WBls:0000038.control_median
9.36685From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004118.6071From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
20.3014From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
20.9574From_analysisRNASeq.briggsae.WBls:0000041.control_mean
21.0893From_analysisRNASeq.briggsae.WBls:0000041.control_median
21.8773From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
23.0439From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
22.4606From_analysisRNASeq.briggsae.WBls:0000041.control_median
23.4654From_analysisRNASeq.briggsae.WBls:0000041.control_mean
25.6414From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
31.3211From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000633.88138From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
4.32954From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
5.40122From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
5.82068From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.89533From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
9.59595From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
11.7893From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
5.64827From_analysisRNASeq.briggsae.WBls:0000063.control_median
6.81545From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001017.79792From_analysisRNASeq.briggsae.total_over_all_stages.control_median
8.97653From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
7.83902From_analysisRNASeq.briggsae.total_over_all_stages.control_median
9.67309From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (30)
ParalogWBGene00025351Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00025500Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027123Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033483Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035594Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: RNA-polymerase II-associated protein 3-like, C-terminal domain; Tetratricopeptide repeat; Potential Monad-binding region of RPAP3; and Tetratricopeptide-like helical domain superfamily. Is an ortholog of C. elegans rpap-3.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG26455
Corresponding_transcriptCBG26455.1
Other_sequenceCBC02458_1
CRC12151_1
Experimental_infoExpr_patternExpr1064777
Microarray_resultsGPL14143_CBG26455_121-180_0.898_9_B
GPL14143_CBG26455_175-234_0.913_5_C
GPL14143_CBG26455_775-834_0.907_7_A
MethodGene