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WormBase Tree Display for Gene: WBGene00034847

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Name Class

WBGene00034847SMapS_parentSequencecb25.fpc3857a
IdentityVersion2
NameCGC_nameCbr-lim-4From_analysisInferred_from_orthology
Sequence_nameCBG14299
Molecular_nameCBG14299
CBG14299.1
CBP09607
Other_nameCBG_14299Accession_evidenceNDBHE600983
Public_nameCbr-lim-4
DB_infoDatabaseNDBlocus_tagCBG_14299
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:04WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-lim-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlim
RNASeq_FPKMWBls:00000020.534462From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.17954From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.35657From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.6476From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.537073From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.946822From_analysisRNASeq.briggsae.WBls:0000002.control_median
1.01893From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.080349From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.858769From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.63719From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
1.69913From_analysisRNASeq.briggsae.WBls:0000003.control_mean
3.37985From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000412.5437From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
14.4657From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
16.3877From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
14.0933From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
14.5687From_analysisRNASeq.briggsae.WBls:0000004.control_mean
14.5729From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
15.2461From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:00000241.97537From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
2.24162From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
2.77246From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
2.79291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
3.03165From_analysisRNASeq.briggsae.WBls:0000024.control_median
3.18365From_analysisRNASeq.briggsae.WBls:0000024.control_mean
3.29084From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
4.69594From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
4.81753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
3.50368From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
3.6247From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
3.65895From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
WBls:00000270.066123From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.707266From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.51949From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.78509From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.42516From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.67538From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.14306From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000352.04818From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.253496From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
0.781359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
0.798272From_analysisRNASeq.briggsae.WBls:0000038.control_median
0.815185From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
0.87952From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.66804From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.092641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.112971From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.11444From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.115908From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.209038From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.514634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.158109From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.200309From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
0.249355From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.459669From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.081395From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.199271From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.206248From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.214587From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.535989From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.206929From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.256961From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.510524From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001010.707266From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.03153From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.744313From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.89624From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00138331
OrthologWBGene00002987Caenorhabditis elegansFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00051912Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00120288Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
CBOVI.g2483Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g3313Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12595Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10413Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g459Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g23296Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g359Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g20491Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26580Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g22445Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00457.g11076Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lim-4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18236Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00003.g236Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00761Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024170Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13527Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g1562Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0264100Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00227603Brugia malayiFrom_analysisWormBase-Compara
chrX_pilon.g18830Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00238705Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00203796Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00255929Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00292218Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00023690Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027659Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028234Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029930Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030186Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030483Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033216Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036200Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036585Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037272Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity. Is an ortholog of C. elegans lim-4. In C. elegans, lim-4 is involved in several processes, including cell differentiation; positive regulation of transcription by RNA polymerase II; and serotonin biosynthetic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG14299
Corresponding_CDS_historyCBG14299:bp194
Corresponding_transcriptCBG14299.1
Other_sequenceJI170552.1
ACC02215_1
EY458469.1
EY467710.1
OF00872
OFC00496_1
JI481697.1
Oden_isotig21465
TMC01536_1
Acan_isotig11140
JI476528.1
TM01828
EY466079.1
EY463566.1
Experimental_infoExpr_patternExpr1055918
Microarray_resultsGPL8303_CB6_WBGene00034847_A
GPL8303_CB6_WBGene00034847_B
GPL14143_CBG14299_516-575_0.816_27_C
GPL14143_CBG14299_620-679_0.833_10_B
GPL14143_CBG14299_777-836_0.854_6_A
MethodGene