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WormBase Tree Display for Gene: WBGene00041056

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Name Class

WBGene00041056SMapS_parentSequencecb25.fpc4347a
IdentityVersion4
NameCGC_nameCbr-che-6From_analysisInferred_from_orthology
Sequence_nameCBG22517
Molecular_nameCBG22517a
CBG22517a.1
CBP27652
CBG22517b
CBP45332
CBG22517b.1
Other_nameCBG_22517Accession_evidenceNDBHE600977
Public_nameCbr-che-6
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:11WBPerson1971EventImportedInitial conversion from brigace
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-che-6
308 Feb 2019 15:42:29WBPerson1983Name_changeCGC_nameRemoved
408 May 2019 10:09:21WBPerson1983Name_changeCGC_nameCbr-che-6
528 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
628 Jul 2021 11:12:26WBPerson1983Name_changeCGC_nameCbr-che-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classche
AlleleWBVar00034087
WBVar00034092
WBVar00034077
WBVar00034082
RNASeq_FPKMWBls:00000020.075619From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.191999From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.23907From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.261308From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.072209From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.157344From_analysisRNASeq.briggsae.WBls:0000002.control_median
0.162051From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.109916From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0.578783From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
1.04765From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0.104657From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
0.148544From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.337564From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
0.349666From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:00000240.420336From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
0.509921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
0.525667From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
0.614536From_analysisRNASeq.briggsae.WBls:0000024.control_median
0.71915From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
0.820082From_analysisRNASeq.briggsae.WBls:0000024.control_mean
1.15767From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
1.63092From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
1.86896From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
0.549102From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
1.1708From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
1.38572From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
WBls:00000270.547463From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.64239From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.265413From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.530827From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
0.543304From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000350.418467From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.025734From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
0.136014From_analysisRNASeq.briggsae.WBls:0000038.control_median
0.211333From_analysisRNASeq.briggsae.WBls:0000038.control_mean
0.246295From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
0.573302From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:00000410.036672From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.049383From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.08609From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.10403From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.122797From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.207269From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.094066From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
0.094446From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.094826From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
0.100836From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000630.048795From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.243975From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.05548From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.088903From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001010.109916From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.295868From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.099742From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.26452From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00144361
00144362
00144363
00144364
OrthologWBGene00000487Caenorhabditis elegansFrom_analysisInparanoid_8
WormBase-Compara
WBGene00022295Caenorhabditis elegansFrom_analysisOrthoMCL
WBGene00068888Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00156108Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
CBOVI.g8797Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g16122Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g6191Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g21363Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP31.g4705Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g4707Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12975Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g6156Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP40.g16017Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00092.g4117Caenorhabditis angariaFrom_analysisWormBase-Compara
Csp11.Scaffold570.g4225Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10738Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01061.g18056Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_15565Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_016060Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10794Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_40038300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g9766Caenorhabditis elegansFrom_analysisWormBase-Compara
ParalogWBGene00028880Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029133Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032686Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033375Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036641Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039233Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00045213Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable monoatomic ion channel activity. Predicted to be involved in monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans che-6.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG22517a
CBG22517b
Corresponding_CDS_historyCBG22517:bp194
Corresponding_transcriptCBG22517a.1
CBG22517b.1
Other_sequenceOden_isotig20243
JI168297.1
Experimental_infoExpr_patternExpr1051022
Microarray_resultsGPL8303_CB6_WBGene00041056_A
GPL8303_CB6_WBGene00041056_B
GPL14143_CBG22517_987-1046_0.858_47_B
GPL14143_CBG22517_1099-1158_0.878_35_C
GPL14143_CBG22517_1195-1254_0.858_46_A
Remark[190208 pad] The CGC name Cbr-che-6 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Cbr-che-6 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene