WormBase Tree Display for Sequence: Y54G2A
expand all nodes | collapse all nodes | view schema
Y54G2A | DNA | Y54G2A | 286680 | |||
---|---|---|---|---|---|---|
SMap | S_child | Gene_child | WBGene00202412 | 231030 | 231081 | |
WBGene00021886 | 164595 | 152215 | ||||
WBGene00199591 | 49960 | 49869 | ||||
WBGene00044486 | 28890 | 30445 | ||||
WBGene00021881 | 114622 | 105374 | ||||
WBGene00023182 | 51001 | 50930 | ||||
WBGene00200823 | 248647 | 248499 | ||||
WBGene00219424 | 27920 | 28350 | ||||
WBGene00198012 | 254102 | 253994 | ||||
WBGene00197276 | 253994 | 254102 | ||||
WBGene00021893 | 278721 | 273182 | ||||
WBGene00045397 | 48465 | 46840 | ||||
WBGene00305824 | 278721 | 278223 | ||||
WBGene00021897 | 209877 | 214180 | ||||
WBGene00189961 | 219719 | 223245 | ||||
WBGene00201650 | 248548 | 248696 | ||||
WBGene00044493 | 167808 | 169563 | ||||
WBGene00196817 | 233733 | 233630 | ||||
WBGene00305825 | 245352 | 245028 | ||||
WBGene00002243 | 228263 | 214113 | ||||
WBGene00021892 | 262200 | 259240 | ||||
WBGene00195988 | 231081 | 231030 | ||||
WBGene00021883 | 142274 | 141339 | ||||
WBGene00200008 | 247136 | 247431 | ||||
WBGene00021878 | 69512 | 64347 | ||||
WBGene00021887 | 172022 | 169606 | ||||
WBGene00021871 | 136734 | 139030 | ||||
WBGene00021889 | 189641 | 187769 | ||||
WBGene00044490 | 84595 | 85065 | ||||
WBGene00220180 | 88900 | 89026 | ||||
WBGene00021895 | 92241 | 95384 | ||||
WBGene00021880 | 93761 | 92982 | ||||
WBGene00044495 | 96255 | 101061 | ||||
WBGene00043062 | 73525 | 77848 | ||||
WBGene00201830 | 55487 | 55401 | ||||
WBGene00021870 | 181182 | 186622 | ||||
WBGene00044487 | 51637 | 53062 | ||||
WBGene00021890 | 245251 | 235829 | ||||
WBGene00197842 | 244784 | 244925 | ||||
WBGene00021894 | 53731 | 54692 | ||||
WBGene00043061 | 9242 | 11862 | ||||
WBGene00021898 | 147473 | 151430 | ||||
WBGene00021872 | 100665 | 105235 | ||||
WBGene00021885 | 150417 | 146747 | ||||
WBGene00021876 | 21571 | 15494 | ||||
WBGene00023179 | 52116 | 52187 | ||||
WBGene00021868 | 38468 | 46592 | ||||
WBGene00006708 | 175470 | 172370 | ||||
WBGene00023180 | 55406 | 55477 | ||||
WBGene00195623 | 140622 | 140421 | ||||
WBGene00235350 | 12459 | 15391 | ||||
WBGene00023178 | 49878 | 49949 | ||||
WBGene00044485 | 1647 | 3242 | ||||
WBGene00200607 | 264720 | 264453 | ||||
WBGene00044489 | 82685 | 83158 | ||||
WBGene00021879 | 91251 | 89150 | ||||
WBGene00021882 | 140230 | 121802 | ||||
WBGene00021888 | 178200 | 177296 | ||||
WBGene00023484 | 70487 | 73321 | ||||
WBGene00021875 | 49468 | 50818 | ||||
WBGene00199274 | 245817 | 245965 | ||||
WBGene00044492 | 103043 | 101470 | ||||
WBGene00235268 | 59189 | 62636 | ||||
WBGene00044488 | 55636 | 58813 | ||||
WBGene00043702 | 88387 | 89211 | ||||
WBGene00021869 | 262366 | 264219 | ||||
WBGene00172494 | 93678 | 93658 | ||||
WBGene00044491 | 82466 | 81256 | ||||
WBGene00305826 | 99506 | 99908 | ||||
WBGene00235102 | 140661 | 141415 | ||||
WBGene00003008 | 269517 | 273083 | ||||
WBGene00169683 | 33221 | 33241 | ||||
WBGene00023181 | 58134 | 58205 | ||||
WBGene00171446 | 72475 | 72455 | ||||
WBGene00021873 | 85443 | 88502 | ||||
WBGene00219425 | 258671 | 250320 | ||||
WBGene00021877 | 32622 | 27002 | ||||
WBGene00045166 | 158300 | 154511 | ||||
WBGene00021884 | 144509 | 143593 | ||||
CDS_child (1495) | ||||||
Transcript (115) | ||||||
Pseudogene | Y54G2A.20 | 150417 | 146747 | |||
Y54G2A.21 | 164595 | 152215 | ||||
Y54G2A.24 | 189641 | 187769 | ||||
Y54G2A.42 | 28890 | 30445 | ||||
Transposon | WBTransposon00000722 | 159712 | 152551 | |||
Genomic_non_canonical (12) | ||||||
Nongenomic | yk151d6 | 273223 | 278345 | |||
yk178a7 | 236329 | 241895 | ||||
yk229c12 | 138376 | 141278 | ||||
yk253f1 | 49513 | 50697 | ||||
PCR_product (106) | ||||||
Allele (5253) | ||||||
Oligo_set (52) | ||||||
Feature_object (1976) | ||||||
Feature_data | Y54G2A:Polysome | 1 | 286680 | |||
Y54G2A:TranscriptionallyActiveRegion | 1 | 286680 | ||||
Y54G2A:ChIPSeqTF | 1 | 286680 | ||||
Y54G2A:TRF | 1 | 286680 | ||||
Y54G2A:Dust | 1 | 286680 | ||||
Y54G2A:inverted | 1 | 286680 | ||||
Homol_data (22) | ||||||
Structure | From | Source | CHROMOSOME_IV | |||
Overlap_right | Y67D8C | 282481 | ||||
Overlap_left | Y94H6A | |||||
Clone_left_end | Y54G2 | 1 | ||||
Y67D8 | 199737 | |||||
Y54G2A | 1 | |||||
Clone_right_end | Y54G2 | 286680 | ||||
Y54G2A | 286680 | |||||
DB_info | Database | EMBL | NDB_AC | FO081809 | ||
NDB_ID | _AC024817 | |||||
NDB_SV | FO081809.2 | |||||
Secondary_accession | AC024817 | |||||
DB_remark | The 5' clone is Y94H6A, 200 bp overlap; the 3' clone is Y67D8C, 4200 bp overlap. | |||||
[121025] Sequence correction: SNP 0 bases @ 248905 | ||||||
Keyword | HTG | |||||
EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
Origin | From_author (2) | |||||
From_laboratory | RW | |||||
Date | 17 Dec 1999 00:00:00 | |||||
Date_directory | ||||||
Species | Caenorhabditis elegans | |||||
Visible | Clone | Y54G2A | ||||
Properties | Genomic_canonical | |||||
Checksum | MD5 | 2a5fecbc050dd8e7e490ac288114c6bc | ||||
Status | Finished | |||||
Submitted | 17 Dec 1999 00:00:00 | |||||
Map | Sequence-IV | |||||
Interpolated_map_position | IV | -6.72319 | ||||
Method | Genomic_canonical |