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WormBase Tree Display for Gene: WBGene00001077

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Name Class

WBGene00001077SMapS_parentSequenceCHROMOSOME_III
IdentityVersion1
NameCGC_namedpy-18Person_evidenceWBPerson261
Sequence_nameY47D3B.10
Molecular_nameY47D3B.10
Y47D3B.10.1
CE20261
Other_namephy-1
T28D6.1Paper_evidenceWBPaper00005747
CELE_Y47D3B.10Accession_evidenceNDBBX284603
Public_namedpy-18
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:22WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdpy
Reference_alleleWBVar00143150
Allele (101)
Possibly_affected_byWBVar02158838
Legacy_informatione364amber : medium dumpy. ES3 (adult) ES2 (larvae). ME2. NA3 (e499 e1270).
See also e1862
[C.elegansII] e364amb : medium dumpy. ES3 (adult) ES2 (larvae). ME2. Males have abnormal lumpy rays (Ram) at 25C. OA>10: e499, e1270, e1862,s361fdi, s1304 (induced on eT1), bx26 (Ram at 25C), h662. [Brenner 1974; Baird and Emmons 1990; PB]
Strain (219)
RNASeq_FPKM (74)
GO_annotation (27)
OrthologWBGene00055915Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00045384Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00136166Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00148790Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00271405Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00224104Brugia malayiFrom_analysisWormBase-Compara
WBGene00231085Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g4189Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g15947Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g4939Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g18298Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g21035Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g16705Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g21019Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14830Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g6257Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19216Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g6793Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10050Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00546.g12085Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_14540.g24689Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_20661.g26506Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-dpy-18Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold596.g5311Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02562.g27021Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_22224Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010303Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04926Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04928Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g06475Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g8583Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30098200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g9026Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00245204Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00248767Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00249182Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00249193Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00249197Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00249216Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00249218Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00249281Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00249285Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00249292Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00249397Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00249407Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00249458Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00249466Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00095829Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00262034Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00290565Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0039776Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030827-1Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-040724-91Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-030131-4089Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:8546Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:8547Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:97463Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:894286Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:621000Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:1309673Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ParalogWBGene00015773Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00004026Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00012815Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00004025Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00077688Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptiondpy-18 encodes a catalytic alpha subunit of collagen prolyl 4-hydroxylase (P4H) orthologous to human P4H alpha (I) isoform (OMIM: 176710), an alpha subunit of prolyl-4-hydroxylase which is a procollagen modifying enzyme required for exoskeleton formation, morphogenesis and maintenance of body shape; dpy-18 has a critical role in hydroxylation of cuticle collagens during collagen synthesis; dpy-18, in complex with phy-2, is essential for the survival of the C. elegans; dpy-18 mutations alone result in a mild dumpy phenotype; expressed dpy-18 and ten-1 act in parallel influencing the connection between epidermis and muscle during embryonic development; deletion of dpy-18 causes aggregation of collagen IV in body wall muscles in elongated embryos and triggers the loss of tissue integrity in ten-1 mutants; dpy-18 is expressed throughout the hypodermis, head and posterior neurons.Paper_evidenceWBPaper00004203
WBPaper00031524
WBPaper00039988
Curator_confirmedWBPerson12884
WBPerson324
Date_last_updated18 Aug 2011 00:00:00
Automated_descriptionEnables procollagen-proline 4-dioxygenase activity. Involved in several processes, including cuticle development involved in collagen and cuticulin-based cuticle molting cycle; embryo development; and embryonic body morphogenesis. Located in endoplasmic reticulum. Expressed in hypodermis; muscle cell; neurons; and pharynx. Human ortholog(s) of this gene implicated in myopia. Is an ortholog of human P4HA1 (prolyl 4-hydroxylase subunit alpha 1) and P4HA2 (prolyl 4-hydroxylase subunit alpha 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:11830Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:8547)
Molecular_infoCorresponding_CDSY47D3B.10
Corresponding_transcriptY47D3B.10.1
Other_sequence (83)
Associated_feature (11)
Experimental_infoRNAi_resultWBRNAi00056767Inferred_automaticallyRNAi_primary
WBRNAi00115627Inferred_automaticallyRNAi_primary
WBRNAi00027622Inferred_automaticallyRNAi_primary
WBRNAi00026722Inferred_automaticallyRNAi_primary
WBRNAi00094817Inferred_automaticallyRNAi_primary
WBRNAi00065822Inferred_automaticallyRNAi_primary
WBRNAi00094816Inferred_automaticallyRNAi_primary
WBRNAi00009344Inferred_automaticallyRNAi_primary
WBRNAi00019394Inferred_automaticallyRNAi_primary
Expr_patternExpr1085
Expr1928
Expr1931
Expr12145
Expr1012505
Expr1030685
Expr1160222
Expr1200375
Expr2011060
Expr2029297
Drives_constructWBCnstr00008961
WBCnstr00010073
WBCnstr00010524
WBCnstr00020362
WBCnstr00037095
Construct_productWBCnstr00008961
WBCnstr00008962
WBCnstr00008963
WBCnstr00010073
WBCnstr00037095
AntibodyWBAntibody00000539
Microarray_results (22)
Expression_cluster (232)
Interaction (111)
WBProcessWBbiopr:00000124
Map_infoMapIIIPosition8.85117Error0.054776
Well_ordered
PositiveInside_rearrtDp1
mT1
Positive_cloneY47D3BInferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_data2_point (58)
Multi_point (145)
Pos_neg_data (11)
Landmark_gene
Reference (127)
MethodGene