WormBase Tree Display for Gene: WBGene00003231
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| WBGene00003231 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | AH6 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mex-6 | Person_evidence | WBPerson498 | |||||
| Sequence_name | AH6.5 | ||||||||
| Molecular_name | AH6.5 | ||||||||
| AH6.5.1 | |||||||||
| CE26846 | |||||||||
| Other_name | CELE_AH6.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | mex-6 | ||||||||
| DB_info | Database | AceView | gene | 2J815 | |||||
| WormQTL | gene | WBGene00003231 | |||||||
| WormFlux | gene | WBGene00003231 | |||||||
| NDB | locus_tag | CELE_AH6.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003231|UniProtKB=Q09436 | |||||||
| family | PTHR12547 | ||||||||
| NCBI | gene | 174504 | |||||||
| RefSeq | protein | NM_063642.7 | |||||||
| SwissProt | UniProtAcc | Q09436 | |||||||
| TREEFAM | TREEFAM_ID | TF322043 | |||||||
| UniProt_GCRP | UniProtAcc | Q09436 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mex | ||||||||
| Allele (40) | |||||||||
| Legacy_information | [Priess, J./Plasterk,] pk440: Strain is viable, but enhances phenotype of maternal-effect lethal mutation mex-5(zu199). Embryos from mex-6(pk440);mex-5(zu199) hermaphrodites produce only hypodermis and muscle cell types. | ||||||||
| Strain | WBStrain00022453 | ||||||||
| WBStrain00022485 | |||||||||
| WBStrain00022487 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (29) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | mex-6 encodes a CCCH zinc-finger protein highly similar to MEX-5 that functions with MEX-5 to affect embryonic viability, establish soma germline asymmetry in embryos and establish PIE-1, MEX-1, and POS-1 asymmetry in embryos, and also affects formation of intestinal cells; MEX-6 and MEX-5 may act downstream of the PAR proteins. | Paper_evidence | WBPaper00004540 | |||||
| WBPaper00005160 | |||||||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables mRNA 3'-UTR binding activity; protein domain specific binding activity; and protein kinase binding activity. Involved in regulation of protein localization. Located in P granule. Expressed in AB; ABa; ABp; and germ line. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | AH6.5 | |||||||
| Corresponding_CDS_history | AH6.5:wp12 | ||||||||
| AH6.5:wp43 | |||||||||
| Corresponding_transcript | AH6.5.1 | ||||||||
| Other_sequence | CGC00109_1 | ||||||||
| Associated_feature | WBsf028078 | ||||||||
| WBsf976539 | |||||||||
| WBsf976540 | |||||||||
| WBsf976541 | |||||||||
| WBsf976542 | |||||||||
| WBsf978799 | |||||||||
| WBsf989072 | |||||||||
| WBsf221892 | |||||||||
| WBsf221893 | |||||||||
| Transcription_factor | WBTranscriptionFactor000454 | ||||||||
| Experimental_info | RNAi_result (68) | ||||||||
| Expr_pattern | Expr2463 | ||||||||
| Expr4100 | |||||||||
| Expr10817 | |||||||||
| Expr1016913 | |||||||||
| Expr1031528 | |||||||||
| Expr1142831 | |||||||||
| Expr2013544 | |||||||||
| Expr2031778 | |||||||||
| Drives_construct | WBCnstr00036173 | ||||||||
| WBCnstr00039800 | |||||||||
| Construct_product | WBCnstr00000077 | ||||||||
| WBCnstr00005217 | |||||||||
| WBCnstr00036173 | |||||||||
| WBCnstr00039800 | |||||||||
| Antibody | WBAntibody00000903 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (202) | |||||||||
| Interaction (365) | |||||||||
| WBProcess | WBbiopr:00000017 | ||||||||
| Map_info | Map | II | Position | 1.49849 | Error | 0.002846 | |||
| Positive | Positive_clone | AH6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4488 | |||||||
| Pseudo_map_position | |||||||||
| Reference (58) | |||||||||
| Remark | Sequence analysis of the mex-6(pk440) allele showed that bases 12737- 15477 corresponding to the AH6 cosmid were deleted. This work was done in the lab of Ron Plasterk. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
