WormBase Tree Display for Gene: WBGene00004729
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WBGene00004729 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | sax-3 | Person_evidence | WBPerson42 | |||||
Sequence_name | ZK377.2 | ||||||||
Molecular_name | ZK377.2a | ||||||||
ZK377.2a.1 | |||||||||
CE25688 | |||||||||
ZK377.2b | |||||||||
CE31267 | |||||||||
ZK377.2b.1 | |||||||||
Other_name | CELE_ZK377.2 | Accession_evidence | NDB | BX284606 | |||||
Public_name | sax-3 | ||||||||
DB_info | Database | AceView | gene | XE72 | |||||
WormQTL | gene | WBGene00004729 | |||||||
WormFlux | gene | WBGene00004729 | |||||||
NDB | locus_tag | CELE_ZK377.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004729|UniProtKB=G5EBF1 | |||||||
family | PTHR11640 | ||||||||
NCBI | gene | 180637 | |||||||
RefSeq | protein | NM_171652.8 | |||||||
NM_001029819.7 | |||||||||
SwissProt | UniProtAcc | G5EBF1 | |||||||
TREEFAM | TREEFAM_ID | TF351053 | |||||||
UniProt_GCRP | UniProtAcc | G5EBF1 | |||||||
OMIM | gene | 602430 | |||||||
602431 | |||||||||
608630 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 02 Mar 2018 11:09:16 | WBPerson4025 | Event | Split_into | WBGene00303098 | ||||
Split_into | WBGene00303098 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sax | ||||||||
Allele | WBVar00088418 | Inferred_automatically | From strain object: CX3171 | ||||||
WBVar00088406 | Inferred_automatically | From strain object: CX3198 | |||||||
From strain object: IC361 | |||||||||
From strain object: IC459 | |||||||||
From strain object: IC464 | |||||||||
From strain object: IC476 | |||||||||
From strain object: IC699 | |||||||||
WBVar00499132 | |||||||||
WBVar01133888 | |||||||||
WBVar00499133 | |||||||||
WBVar01133889 | |||||||||
WBVar01133890 | |||||||||
WBVar00499134 | |||||||||
WBVar01133891 | |||||||||
WBVar00499135 | |||||||||
WBVar00499136 | |||||||||
WBVar01825047 | |||||||||
WBVar01133892 | |||||||||
WBVar00499137 | |||||||||
WBVar01133893 | |||||||||
WBVar00499138 | |||||||||
WBVar01133894 | |||||||||
WBVar00499139 | |||||||||
WBVar01133895 | |||||||||
WBVar01133896 | |||||||||
WBVar00499140 | |||||||||
WBVar01133897 | |||||||||
WBVar00499141 | |||||||||
WBVar00499142 | |||||||||
WBVar02056360 | |||||||||
WBVar01133898 | |||||||||
WBVar01133899 | |||||||||
WBVar00499143 | |||||||||
WBVar00077121 | |||||||||
WBVar00499144 | |||||||||
WBVar01133900 | |||||||||
WBVar00077122 | |||||||||
WBVar00499145 | |||||||||
WBVar01133901 | |||||||||
WBVar00077123 | |||||||||
WBVar00088416 | |||||||||
WBVar01133902 | |||||||||
WBVar00499146 | |||||||||
WBVar00499147 | |||||||||
WBVar01133903 | |||||||||
WBVar00088420 | |||||||||
WBVar01133904 | |||||||||
WBVar01133905 | |||||||||
WBVar01133906 | |||||||||
WBVar01133907 | |||||||||
WBVar01133908 | |||||||||
WBVar01133909 | |||||||||
WBVar01133910 | |||||||||
WBVar01133911 | |||||||||
WBVar01133912 | |||||||||
WBVar01133913 | |||||||||
WBVar01133914 | |||||||||
WBVar01133915 | |||||||||
WBVar01133916 | |||||||||
WBVar01133917 | |||||||||
WBVar01133918 | |||||||||
WBVar01133919 | |||||||||
WBVar01133920 | |||||||||
WBVar01133921 | |||||||||
WBVar01133922 | |||||||||
WBVar01133923 | |||||||||
WBVar01133924 | |||||||||
WBVar01133925 | |||||||||
WBVar01133926 | |||||||||
WBVar01819554 | |||||||||
WBVar01133927 | |||||||||
WBVar01133928 | |||||||||
WBVar01133929 | |||||||||
WBVar01133930 | |||||||||
WBVar01133931 | |||||||||
WBVar01133932 | |||||||||
WBVar01945140 | |||||||||
WBVar01133933 | |||||||||
WBVar01133934 | |||||||||
WBVar01133935 | |||||||||
WBVar01133936 | |||||||||
WBVar01133937 | |||||||||
WBVar01133938 | |||||||||
WBVar02026922 | |||||||||
WBVar02026923 | |||||||||
WBVar01133939 | |||||||||
WBVar02111081 | |||||||||
WBVar01133940 | |||||||||
WBVar01133941 | |||||||||
WBVar01133942 | |||||||||
WBVar02153697 | |||||||||
WBVar01133943 | |||||||||
WBVar01133944 | |||||||||
WBVar01133945 | |||||||||
WBVar01133946 | |||||||||
WBVar01133947 | |||||||||
WBVar01133948 | |||||||||
WBVar01486695 | |||||||||
WBVar02044495 | |||||||||
WBVar01133949 | |||||||||
WBVar02044496 | |||||||||
WBVar01133950 | |||||||||
WBVar01133951 | |||||||||
WBVar01133952 | |||||||||
WBVar01133953 | |||||||||
WBVar01133954 | |||||||||
WBVar01133955 | |||||||||
WBVar01133956 | |||||||||
WBVar01133957 | |||||||||
WBVar01133958 | |||||||||
WBVar01980154 | |||||||||
WBVar01133959 | |||||||||
WBVar01133960 | |||||||||
WBVar01133961 | |||||||||
WBVar01133962 | |||||||||
WBVar01133963 | |||||||||
WBVar01133964 | |||||||||
WBVar01133965 | |||||||||
WBVar01133966 | |||||||||
WBVar01133967 | |||||||||
WBVar01133968 | |||||||||
WBVar01133969 | |||||||||
WBVar01133970 | |||||||||
WBVar01133971 | |||||||||
WBVar01133972 | |||||||||
WBVar01133973 | |||||||||
WBVar01133974 | |||||||||
WBVar01133975 | |||||||||
WBVar01133976 | |||||||||
WBVar01133977 | |||||||||
WBVar01133978 | |||||||||
WBVar01133979 | |||||||||
WBVar01133980 | |||||||||
WBVar01133981 | |||||||||
WBVar01496664 | |||||||||
WBVar01133982 | |||||||||
WBVar01133983 | |||||||||
WBVar02152624 | |||||||||
WBVar01133984 | |||||||||
WBVar01133985 | |||||||||
WBVar01133986 | |||||||||
WBVar01601369 | |||||||||
WBVar01601370 | |||||||||
WBVar01601371 | |||||||||
WBVar01998626 | |||||||||
WBVar01499636 | |||||||||
WBVar01661389 | |||||||||
WBVar01468283 | |||||||||
WBVar01468284 | |||||||||
WBVar01468285 | |||||||||
WBVar01468286 | |||||||||
WBVar01468287 | |||||||||
WBVar02139019 | |||||||||
WBVar02139020 | |||||||||
WBVar00499117 | |||||||||
WBVar00499118 | |||||||||
WBVar00499119 | |||||||||
WBVar00499120 | |||||||||
WBVar00499121 | |||||||||
WBVar00499122 | |||||||||
WBVar00499123 | |||||||||
WBVar00499124 | |||||||||
WBVar00499125 | |||||||||
WBVar02148417 | |||||||||
WBVar00499126 | |||||||||
WBVar00499127 | |||||||||
WBVar02048722 | |||||||||
WBVar01133884 | |||||||||
WBVar00499128 | |||||||||
WBVar01133885 | |||||||||
WBVar00499129 | |||||||||
WBVar00499130 | |||||||||
WBVar01133886 | |||||||||
WBVar01500067 | |||||||||
WBVar01133887 | |||||||||
WBVar00499131 | |||||||||
Legacy_information | [Zallen JA] ky123 recessive, homozygotes exhibit aberrant anterior position of nerve ring, many ring axons misrouted, ventral nerve cord neurons often misrouted, cross midline. Encodes three isoforms, longest 1273 aa with 5 Ig repeats, 3 FNIII repeats, TM domain, large cytoplasmic domain. ky123 deletes signal sequence and first exon, probable null. Predicted gene ZK377.3 + ZK377.2 | ||||||||
Strain (11) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (14) | |||||||||
Ortholog (50) | |||||||||
Paralog (22) | |||||||||
Structured_description | Concise_description | sax-3 encodes, by alternative splicing, two isoforms of an ortholog of Drosophila ROUNDABOUT, ROBO3, and LEAK, and of human ROBO1, ROBO2 (OMIM:602431, mutated in vesicoureteral reflux), and ROBO3 (OMIM:608630, mutated in horizontal gaze palsy with progressive scoliosis); in larval hermaphrodites, SAX-3 is required to confine migrating sex myoblasts to the ventral muscle quadrants during their migration through the body and for multiple aspects of sensory, motor, and interneuron axon guidance. | Paper_evidence | WBPaper00003665 | |||||
WBPaper00004362 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 24 Jan 2008 00:00:00 | ||||||||
Automated_description | Enables axon guidance receptor activity. Involved in generation of neurons and regulation of sensory neuron axon guidance. Located in plasma membrane. Expressed in several structures, including QR.a; QR.p; body wall musculature; neuroblasts; and neurons. Human ortholog(s) of this gene implicated in several diseases, including autosomal recessive congenital nystagmus; hematologic cancer (multiple); and myositis (multiple). Is an ortholog of human ROBO1 (roundabout guidance receptor 1); ROBO2 (roundabout guidance receptor 2); and ROBO3 (roundabout guidance receptor 3). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model (11) | ||||||||
Molecular_info | Corresponding_CDS | ZK377.2a | |||||||
ZK377.2b | |||||||||
Corresponding_CDS_history | ZK377.2c:wp264 | ||||||||
Corresponding_transcript | ZK377.2a.1 | ||||||||
ZK377.2b.1 | |||||||||
Other_sequence (32) | |||||||||
Associated_feature (39) | |||||||||
Experimental_info | RNAi_result | WBRNAi00086088 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00086133 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009468 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009467 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00067130 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059385 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (17) | |||||||||
Drives_construct | WBCnstr00001914 | ||||||||
WBCnstr00003185 | |||||||||
WBCnstr00006455 | |||||||||
WBCnstr00009445 | |||||||||
WBCnstr00012503 | |||||||||
WBCnstr00016209 | |||||||||
WBCnstr00035424 | |||||||||
WBCnstr00039977 | |||||||||
WBCnstr00041184 | |||||||||
Construct_product (15) | |||||||||
Microarray_results (28) | |||||||||
Expression_cluster (134) | |||||||||
Interaction (262) | |||||||||
Anatomy_function | WBbtf0177 | ||||||||
Map_info | Map | X | Position | -10.3398 | Error | 0.007528 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | mnDp57 | |||||||
Positive_clone | R06A1 | ||||||||
ZK377 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 3695 | |||||||
3696 | |||||||||
4758 | |||||||||
Pos_neg_data | 9401 | ||||||||
Reference (143) | |||||||||
Remark | Inferred from Zallen et al. (1998) | ||||||||
2 predicted genes (see phenotype) have been merged. [sdm 05/00] | |||||||||
Method | Gene |