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WormBase Tree Display for Gene: WBGene00024808

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Name Class

WBGene00024808SMapS_parentSequencecb25.fpc0039
Identity (6)
Gene_infoBiotypeSO:0001217
Gene_classvha
RNASeq_FPKMWBls:000000250.8451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
56.2453From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
58.9281From_analysisRNASeq.briggsae.WBls:0000002.control_mean
69.694From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
26.4359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
50.8051From_analysisRNASeq.briggsae.WBls:0000002.control_mean
53.5452From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
3.94208From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
7.88415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
4.8538From_analysisRNASeq.briggsae.WBls:0000003.control_mean
6.67725From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000463.7593From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
64.4486From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
65.1379From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
62.4944From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
63.9046From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
64.3694From_analysisRNASeq.briggsae.WBls:0000004.control_mean
66.551From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002713.8975From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
156.873From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
41.905From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
70.8918From_analysisRNASeq.briggsae.WBls:0000027.control_mean
59.4236From_analysisRNASeq.briggsae.WBls:0000027.control_median
72.4044From_analysisRNASeq.briggsae.WBls:0000027.control_mean
76.9422From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:0000035135.167From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038101.416From_analysisRNASeq.briggsae.WBls:0000038.control_mean
154.706From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
74.2763From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
81.1924From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
88.3404From_analysisRNASeq.briggsae.WBls:0000038.control_median
95.4884From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004134.0416From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
42.5054From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
47.5694From_analysisRNASeq.briggsae.WBls:0000041.control_median
52.6334From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
53.7768From_analysisRNASeq.briggsae.WBls:0000041.control_mean
85.9267From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
37.4151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
53.9568From_analysisRNASeq.briggsae.WBls:0000041.control_mean
71.2189From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006332.6064From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
35.4468From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
36.8986From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
37.4076From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
39.3579From_analysisRNASeq.briggsae.WBls:0000063.control_mean
54.4299From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
37.1531From_analysisRNASeq.briggsae.WBls:0000063.control_median
43.4852From_analysisRNASeq.briggsae.WBls:0000063.control_mean
64.1221From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010156.2453From_analysisRNASeq.briggsae.total_over_all_stages.control_median
69.0382From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
63.1269From_analysisRNASeq.briggsae.total_over_all_stages.control_median
65.2071From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00128196
00128197
00128198
00128199
OrthologWBGene00006768Caenorhabditis elegansFrom_analysisOrthoMCL
WBGene00006914Caenorhabditis elegansFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00006915Caenorhabditis elegansFrom_analysisOrthoMCL
WBGene00006916Caenorhabditis elegansFrom_analysisOrthoMCL
WBGene00059467Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00075032Caenorhabditis remaneiFrom_analysisOMA
WormBase-Compara
WBGene00150020Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00136401Caenorhabditis japonicaFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00190073Caenorhabditis brenneriFrom_analysisWormBase-Compara
CBOVI.g8573Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6657Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g14172Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g7039Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g7162Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7848Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12831Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g8606Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g28872Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g12940Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00088.g3984Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00263.g8085Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-vha-5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g7551Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00052.g2640Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_16366Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_014710Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12466Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g14411Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40113100Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00224112Brugia malayiFrom_analysisWormBase-Compara
chrIV_pilon.g11037Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00180595Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00240694Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00280902Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00267550Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00289220Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00025861Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00026344Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029076Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in proton transmembrane transport. Predicted to be part of vacuolar proton-transporting V-type ATPase, V0 domain. Is an ortholog of C. elegans vha-5. In C. elegans, vha-5 is involved in several processes, including collagen and cuticulin-based cuticle development; exosomal secretion; and multicellular organismal-level water homeostasis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG01592
Corresponding_CDS_historyCBG01592:bp194
CBG01592:bp255
Corresponding_transcriptCBG01592.1
Other_sequence (118)
Experimental_infoExpr_patternExpr1066029
Microarray_resultsGPL8303_CB6_WBGene00024808_A
GPL8303_CB6_WBGene00024808_B
GPL14143_CBG01592_2079-2138_0.908_12_C
GPL14143_CBG01592_2272-2331_0.918_9_B
GPL14143_CBG01592_2586-2645_0.959_1_A
MethodGene