WormBase Tree Display for Gene: WBGene00027872

WBGene00027872 SMap: S_parent: Sequence: cb25.fpc0110
  Identity: Version: 1
    Name: Sequence_name: CBG05418
      Molecular_name: CBG05418
        CBG05418.1
        CBP07084
      Other_name: CBG_05418 Accession_evidence: NDB HE601369
      Public_name: CBG05418
    DB_info: Database: NDB locus_tag CBG_05418
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:57 WBPerson1971 Event: Imported: Initial conversion from brigace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar00044264
      WBVar00044269
    RNASeq_FPKM: WBls:0000002 0.581238 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        0.595405 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0.726341 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        1.00238 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.699157 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        0.745483 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.802909 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 121.664 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        148.399 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        94.9289 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        122.332 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        123.667 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 34.1807 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
        38.3247 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        42.4688 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        30.3565 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        32.6419 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        36.4236 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        42.4699 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 0.041728 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        0.067725 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        0.083456 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        0.187443 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        0.58592 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
        0.648338 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
        1.91901 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
      WBls:0000027 0 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
            RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
            RNASeq.briggsae.WBls:0000038.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 0.470008 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        3.39998 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        3.50408 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        4.18397 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        4.96795 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        5.1784 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.81731 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        1.73285 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        2.56642 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        2.76108 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
      WBls:0000063 0.149381 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.746906 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.318946 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.16677 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 11.6273 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.525623 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        15.0223 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00131292
      00131293
    Ortholog: WBGene00017135 Caenorhabditis elegans From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00017140 Caenorhabditis elegans From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00101229 Pristionchus pacificus From_analysis: OMA
      WBGene00073072 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00069314 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00069320 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00069313 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00069316 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00075582 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00073073 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00069317 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00071728 Caenorhabditis remanei From_analysis: OMA
            WormBase-Compara
      WBGene00148566 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00139508 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00148519 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00209719 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00214623 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00210081 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CSP26.g10391 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g10392 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g14539 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g14540 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g7502 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g15454 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g2090 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g22747 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g22748 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g22754 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g22755 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g23628 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g23629 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g23640 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g23641 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP39.g16727 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g4094 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g4095 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g4103 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g4104 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g4152 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g4153 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cnig_chr_IV.g13570 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_00210.g7120 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_00210.g7121 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_00242.g7779 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_00242.g7780 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_05455 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_05456 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_05458 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_09890 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_004261 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_004266 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_004267 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_004268 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_004269 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_004270 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_004271 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_004272 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_004273 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_004457 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g18673 Panagrellus redivivus From_analysis: WormBase-Compara
      WBGene00233716 Brugia malayi From_analysis: WormBase-Compara
      chrII_pilon.g4487 Caenorhabditis elegans From_analysis: WormBase-Compara
      chrII_pilon.g4488 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00065835 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00065836 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00069315 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00246745 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00092561 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00096672 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00112861 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00271904 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00273241 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00274580 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00267708 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog: WBGene00027835 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00027836 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00023974 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00024801 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027063 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035657 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00087396 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable RNA binding activity. Is an ortholog of C. elegans EEED8.12 and EEED8.4. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG05418
    Corresponding_CDS_history: CBG05418:bp194
    Corresponding_transcript: CBG05418.1
    Other_sequence: TS02513
  Experimental_info: Expr_pattern: Expr1068694
    Microarray_results: GPL8303_CB6_WBGene00027872_A
      GPL8303_CB6_WBGene00027872_B
      GPL8303_CB6_WBGene00027872_C
      GPL8303_CB6_WBGene00027872_D
      GPL8303_CB6_WBGene00027872_E
      GPL14143_CBG05418_461-520_0.977_1_A
  Method: Gene