WormBase Tree Display for Gene: WBGene00033216
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| WBGene00033216 | SMap | S_parent | Sequence | cb25.fpc2887b | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | Cbr-lin-11 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | CBG12236 | ||||||||
| Molecular_name | CBG12236 | ||||||||
| CBG12236.1 | |||||||||
| CBP41561 | |||||||||
| Other_name | CBG_12236 | Accession_evidence | NDB | HE600958 | |||||
| Public_name | Cbr-lin-11 | ||||||||
| DB_info | Database | NDB | locus_tag | CBG_12236 | |||||
| Species | Caenorhabditis briggsae | ||||||||
| History | Version_change | 1 | 08 Sep 2004 10:52:02 | WBPerson1971 | Event | Imported | Initial conversion from brigace | ||
| 2 | 20 Sep 2007 17:07:04 | WBPerson2970 | Name_change | CGC_name | Cbr-lin-11 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lin | ||||||||
| RNASeq_FPKM (10) | |||||||||
| GO_annotation | 00136574 | ||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00023690 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | |||||
| WBGene00027659 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
| WBGene00028234 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
| WBGene00029930 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
| WBGene00030186 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
| WBGene00030483 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
| WBGene00034847 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
| WBGene00036200 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
| WBGene00036585 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
| WBGene00037272 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | Cbr-lin-11 encodes a LIM Homeodomain containing protein that is orthologous to C. elegans lin-11; Cbr-lin-11 is involved in multiple processes including vulval morphogenesis, vulva-uterine connection formation, and thermosensation; Cbr-lin-11::GFP expression is detected in developing vulval cells, uterine pi lineage cells and several neurons; while the vulval expression is mediated by Wnt signaling, the LIN-12/Notch pathway controls uterine expression of Cbr-lin-11. | Paper_evidence | WBPaper00041660 | |||||
| WBPaper00032298 | |||||||||
| Person_evidence | WBPerson225 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 04 Sep 2013 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity. Is an ortholog of C. elegans lin-11. In C. elegans, lin-11 is involved in several processes, including axonal fasciculation; egg-laying behavior; and positive regulation of vulval development. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | CBG12236 | |||||||
| Corresponding_CDS_history | CBG12236:bp194 | ||||||||
| CBG12236:bp255 | |||||||||
| Corresponding_transcript | CBG12236.1 | ||||||||
| Other_sequence (18) | |||||||||
| Experimental_info | Expr_pattern | Expr1059163 | |||||||
| Microarray_results | GPL8303_CB6_WBGene00033216_A | ||||||||
| GPL14143_CBG12236_653-712_0.901_19_B | |||||||||
| GPL14143_CBG12236_735-794_0.919_11_A | |||||||||
| GPL14143_CBG12236_1113-1172_0.960_1_C | |||||||||
| Interaction | WBInteraction000519510 | ||||||||
| WBInteraction000519569 | |||||||||
| Reference | WBPaper00033798 | ||||||||
| WBPaper00035530 | |||||||||
| WBPaper00039473 | |||||||||
| WBPaper00041660 | |||||||||
| Method | Gene |
