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WormBase Tree Display for Gene: WBGene00033216

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Name Class

WBGene00033216SMapS_parentSequencecb25.fpc2887b
IdentityVersion2
NameCGC_nameCbr-lin-11From_analysisInferred_from_orthology
Sequence_nameCBG12236
Molecular_nameCBG12236
CBG12236.1
CBP41561
Other_nameCBG_12236Accession_evidenceNDBHE600958
Public_nameCbr-lin-11
DB_infoDatabaseNDBlocus_tagCBG_12236
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:02WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lin-11
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
RNASeq_FPKMWBls:00000022.33698From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.58016From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.68042From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
2.72308From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2.37339From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
2.52691From_analysisRNASeq.briggsae.WBls:0000002.control_median
2.52847From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.345913From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.22949From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
2.11306From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.88267From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
1.11388From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000412.1709From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
12.4536From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
12.7363From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
10.07From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
12.207From_analysisRNASeq.briggsae.WBls:0000004.control_mean
12.9558From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
13.1021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:00000242.60245From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
3.24143From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
3.77451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
3.881From_analysisRNASeq.briggsae.WBls:0000024.control_median
3.93722From_analysisRNASeq.briggsae.WBls:0000024.control_mean
3.98748From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
4.73019From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
5.38443From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
5.96537From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
1.49487From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
4.90793From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
7.96226From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
WBls:00000270.09614From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.02695From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.02804From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.96103From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.49399From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.87809From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.42823From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000351.77101From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.76686From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.01309From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
4.84994From_analysisRNASeq.briggsae.WBls:0000038.control_median
4.91341From_analysisRNASeq.briggsae.WBls:0000038.control_mean
7.68678From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
8.18691From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:00000411.36614From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.49833From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.70108From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.81821From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.90384From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.50454From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.10211From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.26235From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.30039From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
4.00087From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000632.31812From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2.69958From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.8732From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.08114From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.12023From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
4.39455From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.58856From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
2.78639From_analysisRNASeq.briggsae.WBls:0000063.control_median
2.99904From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001012.50454From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.38079From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.5955From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.96697From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00136574
OrthologWBGene00003000Caenorhabditis elegansFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00062445Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00163028Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
CBOVI.g9959Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6551Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2451Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g20601Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g9713Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g14248Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g13285Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g10233Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g13154Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g18190Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00471.g11235Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lin-11Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g11626Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01070.g18125Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_18875Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_002332Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13123Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g16509Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10186500Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00235032Brugia malayiFrom_analysisWormBase-Compara
chrI_pilon.g2003Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00125552Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00238146Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00306051Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00261749Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00290532Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00023690Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027659Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028234Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029930Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030186Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030483Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034847Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036200Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036585Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037272Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionCbr-lin-11 encodes a LIM Homeodomain containing protein that is orthologous to C. elegans lin-11; Cbr-lin-11 is involved in multiple processes including vulval morphogenesis, vulva-uterine connection formation, and thermosensation; Cbr-lin-11::GFP expression is detected in developing vulval cells, uterine pi lineage cells and several neurons; while the vulval expression is mediated by Wnt signaling, the LIN-12/Notch pathway controls uterine expression of Cbr-lin-11.Paper_evidenceWBPaper00041660
WBPaper00032298
Person_evidenceWBPerson225
Curator_confirmedWBPerson324
Date_last_updated04 Sep 2013 00:00:00
Automated_descriptionPredicted to enable DNA binding activity. Is an ortholog of C. elegans lin-11. In C. elegans, lin-11 is involved in several processes, including axonal fasciculation; egg-laying behavior; and positive regulation of vulval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG12236
Corresponding_CDS_historyCBG12236:bp194
CBG12236:bp255
Corresponding_transcriptCBG12236.1
Other_sequenceXIC02384_1
FE912385.1
JI223164.1
FE913461.1
JI176161.1
SC00458
JO474018.1
JI181361.1
AS10652
ASC02972_1
GR977305.1
XI03024
Dviv_isotig24065
FE909987.1
AS14297
JI171106.1
CBC16044_1
Tcol_isotig19570
Experimental_infoExpr_patternExpr1059163
Microarray_resultsGPL8303_CB6_WBGene00033216_A
GPL14143_CBG12236_653-712_0.901_19_B
GPL14143_CBG12236_735-794_0.919_11_A
GPL14143_CBG12236_1113-1172_0.960_1_C
InteractionWBInteraction000519510
WBInteraction000519569
ReferenceWBPaper00033798
WBPaper00035530
WBPaper00039473
WBPaper00041660
MethodGene