WormBase Tree Display for Gene: WBGene00033375

WBGene00033375 SMap: S_parent: Sequence: cb25.fpc2887d2
  Identity: Version: 2
    Name: CGC_name: Cbr-tax-2 From_analysis: Inferred_from_orthology
      Sequence_name: CBG12422
      Molecular_name: CBG12422
        CBG12422.1
        CBP02991
      Other_name: CBG_12422 Accession_evidence: NDB HE600913
      Public_name: Cbr-tax-2
    DB_info: Database: NDB locus_tag CBG_12422
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:03 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-tax-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tax
    RNASeq_FPKM: WBls:0000002 0.151692 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0.241844 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        0.312402 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.543671 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.115374 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        0.196768 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        0.263145 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.159449 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.318897 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.261124 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        0.464476 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0.347794 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0.392808 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.437823 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        0.250538 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0.396149 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        0.402751 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.581453 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 0.099284 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.35425 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        0.403022 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.755533 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0.554892 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        0.617062 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        1.25918 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0.8645 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.03809 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        0.356211 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        0.375523 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        0.40042 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.425316 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0.585917 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 0.021782 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.060657 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.076754 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.092851 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.109337 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.262059 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.171902 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.187329 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.250953 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        0.43567 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0.075148 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0.084778 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.122772 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0.225969 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.059444 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        0.067296 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        0.080556 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 0.262059 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.339982 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0.290478 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.359808 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Ortholog: WBGene00006525 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00059947 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00135117 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      CBOVI.g10279 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1584 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g20157 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g20159 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14392 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g6761 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g7636 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP38.g11396 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g15273 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g24194 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00152.g5711 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-tax-2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_I.g2142 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold459.g1452 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00218.g7311 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_05136 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002466 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_002468 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05787 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g15758 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10117200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00224134 Brugia malayi From_analysis: WormBase-Compara
      chrI_pilon.g1729 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00086104 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00237102 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00096989 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00259527 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog: WBGene00028880 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029133 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032686 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036641 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039233 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041056 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00045213 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Cyclic nucleotide-binding domain; Cyclic nucleotide-binding-like; and RmlC-like jelly roll fold. Is an ortholog of C. elegans tax-2. In C. elegans, tax-2 is involved in several processes, including G protein-coupled receptor signaling pathway coupled to cGMP nucleotide second messenger; negative regulation of cGMP-mediated signaling; and positive regulation of macromolecule biosynthetic process. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG12422
    Corresponding_transcript: CBG12422.1
    Other_sequence (25)
  Experimental_info: Expr_pattern: Expr1067050
    Microarray_results: GPL8303_CB6_WBGene00033375_A
      GPL8303_CB6_WBGene00033375_B
      GPL14143_CBG12422_1494-1553_0.897_14_C
      GPL14143_CBG12422_1614-1673_0.902_12_B
      GPL14143_CBG12422_1883-1942_0.837_50_A
  Method: Gene