WormBase Tree Display for Gene: WBGene00104188

WBGene00104188 SMap: S_parent: Sequence: PPA_ChrV
  Identity: Version: 5
    Name: CGC_name: Ppa-sqv-4 From_analysis: Inferred_from_orthology
      Sequence_name: PPA14634
      Molecular_name: PPA14634
        PPA14634.1
        PP64002
      Other_name: GENEPREDICTION_SNAP300000071115
        GENEPREDICTION_SNAP300000071116
        GENEPREDICTION_SNAP300000071117
        UMM-S632-0.4 Person_evidence: WBPerson606
        Ppa-unc-122 Inferred_automatically: from gene merge
      Public_name: Ppa-sqv-4
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:05 WBPerson4055 Event: Imported: from NGASP
        2 17 Nov 2017 15:19:42 WBPerson4055 Name_change: CGC_name: Ppa-unc-122
        3 24 Nov 2017 09:46:50 WBPerson4055 Event: Acquires_merge: WBGene00104189
        4 24 Nov 2017 09:46:50 WBPerson4055 Event: Acquires_merge: WBGene00104190
        5 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Ppa-sqv-4
                Other_name: Ppa-unc-122
      Acquires_merge: WBGene00104189
        WBGene00104190
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sqv
    RNASeq_FPKM: WBls:0000032 17.1051 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 11.6269 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        17.1051 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
        17.7757 From_analysis: RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    GO_annotation: 00179804
      00179805
      00179806
    Ortholog: WBGene00005022 Caenorhabditis elegans From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00006845 Caenorhabditis elegans From_analysis: Inparanoid_8
      WBGene00031223 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00038898 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00060887 Caenorhabditis remanei From_analysis: Inparanoid_8
      WBGene00065019 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00146289 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00136059 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00152160 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00132561 Caenorhabditis japonica From_analysis: Inparanoid_8
      WBGene00190956 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00223956 Brugia malayi From_analysis: WormBase-Compara
      WBGene00238318 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g10386 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g5712 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g5714 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g15965 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8263 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g13383 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g22983 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9262 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g22103 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g26252 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g27448 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g9217 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g1520 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00265.g8135 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_II.g7136 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_V.g19398 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g15538 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00391.g10621 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_11815 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_016462 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12065 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g15849 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g8785 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50298000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g15579 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00256188 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00261974 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00294880 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable NAD binding activity and UDP-glucose 6-dehydrogenase activity. Is an ortholog of C. elegans sqv-4. In C. elegans, sqv-4 is involved in several processes, including egg-laying behavior; glycosaminoglycan biosynthetic process; and vulval development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA14634
    Corresponding_transcript: PPA14634.1
    Other_sequence (55)
  Experimental_info: Microarray_results (21)
    Expression_cluster: WBPaper00041207:PP_dauer_up
      WBPaper00041466:PP_germline-ablation_regulated
      WBPaper00041606:PP_X.nematophila_regulated
  Method: Gene