WormBase Tree Display for Variation: WBVar00090811

WBVar00090811 Evidence: Paper_evidence: WBPaper00031335
  Name: Public_name: n4255
    Other_name: C29E6.2b.1:c.1652-1639_1652-1429del
      C29E6.2a.1:c.1655-1639_1655-1429del
    HGVSg: CHROMOSOME_IV:g.11871612_11871822del
  Sequence_details: SMap: S_parent: Sequence: C29E6
    Flanking_sequences: GTCGCTCATTGATTCACATCCATTTTGAG GCCATGATGGGGCTCCCATTGAAT
    Mapping_target: C29E6
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00027428
      WBStrain00034639
      WBStrain00040276
    Component_of_genotype: WBGenotype00000014
    Laboratory: MT
    Status: Live
  Affects: Gene: WBGene00195534
      WBGene00003319
      WBGene00007801
    Transcript: C29E6.8 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      C29E6.2a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C29E6.2a.1:c.1655-1639_1655-1429del
        Intron_number: 6/12
      C29E6.2b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C29E6.2b.1:c.1652-1639_1652-1429del
        Intron_number: 6/12
      C29E6.7
    Interactor (46)
  Isolation: Mutagen: UV-TMP Paper_evidence: WBPaper00031335
  Genetics: Interpolated_map_position: IV 5.35403
  Description: Phenotype (15)
    Phenotype_not_observed: WBPhenotype:0000006 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Egl Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000207 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Defecation cycle is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000634 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Pumping is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000637 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: No defects in dauer formation Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000643 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Unc Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0001233 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Cell number and nuclear staining is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: DAPI staining Paper_evidence: WBPaper00031335
              Curator_confirmed: WBPerson2021
      WBPhenotype:0002535 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Dyf Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        EQ_annotations: Anatomy_term: WBbt:0005666 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005667 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005668 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005665 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005661 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0007807 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0007808 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: DiO staining Paper_evidence: WBPaper00031335
              Curator_confirmed: WBPerson2021
  Disease_info: Models_disease: DOID:5688
    Models_disease_in_annotation: WBDOannot00000257
  Reference: WBPaper00041652
    WBPaper00043908
    WBPaper00031335
  Method: Deletion_allele