WormBase Tree Display for Variation: WBVar02153758

WBVar02153758 Name: Public_name: gk5537
    Other_name: Y54G2A.2b.1:c.373_1285del
      CE37292:p.Gly125TrpfsTer16
      CE26776:p.Gly125TrpfsTer16
      Y54G2A.2a.1:c.373_1285del
    HGVSg: CHROMOSOME_IV:g.2790557_2794717del
  Sequence_details: SMap: S_parent: Sequence: Y54G2A
    Flanking_sequences: AATTCTCCATTATCCGGATTCTCGTGGCGT TGGAACGGTTGGAATCTGATTTGCAGGTAA
    Mapping_target: CHROMOSOME_IV
    Type_of_mutation: Deletion
    SeqStatus: Pending_curation
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00047686
    Laboratory: VC
    Person: WBPerson427
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00021868
    Transcript: Y54G2A.2c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-448
        CDS_position: ?-448
        Protein_position: ?-150
        Intron_number: 1-2/4
        Exon_number: 1-3/5
      Y54G2A.2a.1 (11)
      Y54G2A.2b.1 (11)
  Isolation: Mutagen: CRISPR_Cas9
  Genetics: Interpolated_map_position: IV -6.7398
  Remark: Batch created from Strain genotype data Curator_confirmed: WBPerson1983
    Deletion_verification Flanking sequences and deletion extents inferred from design of CRISPR deletion/selection cassette insertion HDR event. QC-PCR assays indicate that the event is imperfect, but it was not sequenced.
  Method: Deletion_allele