WormBase Tree Display for Gene: WBGene00031320

WBGene00031320 SMap: S_parent: Sequence: cb25.fpc2234
  Identity: Version: 2
    Name: CGC_name: Cbr-unc-47 From_analysis: Inferred_from_orthology
      Sequence_name: CBG09800
      Molecular_name: CBG09800
        CBG09800.1
        CBP24904
      Other_name: CBG_09800 Accession_evidence: NDB HE601459
      Public_name: Cbr-unc-47
    DB_info: Database: NDB locus_tag CBG_09800
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:00 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-unc-47
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: unc
    RNASeq_FPKM: WBls:0000002 2.06747 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        3.08495 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        3.34379 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        4.87896 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        1.87317 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        2.57621 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        2.97614 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.420706 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.841412 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        0.280471 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 2.81502 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        3.55551 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        4.29599 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        4.1286 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        4.19817 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        4.57077 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        4.76303 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 3.30642 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        3.72262 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        3.98515 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        4.52346 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
        5.08583 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        5.50732 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        5.52104 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        7.02948 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        7.34689 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        3.20234 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
        5.09573 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
        6.09143 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
      WBls:0000027 0.220283 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        1.57028 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        2.95192 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        7.06521 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        11.0411 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        4.31775 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        4.97422 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 5.16051 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.337693 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        1.93557 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        3.08112 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        3.16818 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        4.40079 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        5.65043 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 0.225121 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.23285 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.244947 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.257044 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.699254 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.082 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.702832 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.883112 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        1.14862 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        1.35304 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0.451023 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0.476593 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.552084 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0.593965 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        0.596467 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.90867 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        0.573025 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        0.699843 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.21672 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 1.93557 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2.48924 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        1.90437 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2.69349 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Ortholog: WBGene00006783 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00054935 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00156535 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      CBOVI.g5282 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g16367 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g17494 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP29.g23252 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g8831 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g5920 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3817 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g17863 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8062 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00298.g8759 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-unc-47 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_00155.g5830 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_19538 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_009607 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08109 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g22481 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30209100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00226131 Brugia malayi From_analysis: WormBase-Compara
      chrIII_pilon.g8813 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00131875 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00246397 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00261409 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00286618 Trichuris muris From_analysis: WormBase-Compara
      WBGene00290247 Trichuris muris From_analysis: WormBase-Compara
      WBGene00290249 Trichuris muris From_analysis: WormBase-Compara
      WBGene00290965 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301830 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301832 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00024486 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00026376 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027719 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027720 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028330 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029054 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029207 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029867 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00031170 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032337 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033402 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033950 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039081 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00040749 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042435 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00271065 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Expressed in GABAergic neurons; SDQL; and SDQR. Is predicted to encode a protein with the following domains: Amino acid transporter, transmembrane domain and Transmembrane amino acid transporter protein. Is an ortholog of C. elegans unc-47. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG09800
    Corresponding_CDS_history: CBG09800:bp167
    Corresponding_transcript: CBG09800.1
    Other_sequence: Acan_isotig22437
      JI227521.1
      RS09615
      SSC00066_1
      RSC00793_1
      Dviv_isotig33421
      ES561516.1
      SS01731
      JI178176.1
      Acan_isotig21327
      MPC00406_1
      MP01408
      TSC14012_1
  Experimental_info: Expr_pattern: Expr10561
      Expr1053705
    Drives_construct: WBCnstr00018302
    Microarray_results: GPL8303_CB6_WBGene00031320_A
      GPL8303_CB6_WBGene00031320_B
      GPL14143_CBG09800_1072-1131_0.933_2_C
      GPL14143_CBG09800_1151-1210_0.931_3_B
      GPL14143_CBG09800_1379-1438_0.840_59_A
    Interaction: WBInteraction000524190
  Reference: WBPaper00038509
    WBPaper00046856
  Method: Gene