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WormBase Tree Display for Gene: WBGene00271065

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Name Class

WBGene00271065SMapS_parentSequencecb25.fpc0103
IdentityVersion1
NameSequence_nameCBG30197
Molecular_nameCBG30197
CBG30197.1
CBP07010
Public_nameCBG30197
SpeciesCaenorhabditis briggsae
HistoryVersion_change131 Aug 2016 10:30:44WBPerson4025EventCreated
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:00000022.24463From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
2.70775From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.71304From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
3.16559From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.46584From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
2.39727From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.47884From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.019765From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.03953From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.013177From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000040.074979From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.149959From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.04451From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0.07259From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:00000240.970487From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
1.72602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
2.04605From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
3.01696From_analysisRNASeq.briggsae.WBls:0000024.control_mean
3.03761From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
3.13847From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
3.16273From_analysisRNASeq.briggsae.WBls:0000024.control_median
3.28785From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
3.69634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
0.944639From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
3.17855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
3.35682From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
WBls:00000270.56089From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.33199From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.50107From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.61033From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.47116From_analysisRNASeq.briggsae.WBls:0000027.control_median
3.48335From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.43017From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000354.86082From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000382.87557From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
4.6855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.72333From_analysisRNASeq.briggsae.WBls:0000038.control_mean
5.02203From_analysisRNASeq.briggsae.WBls:0000038.control_median
5.35856From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
5.97371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000411.36869From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.02927From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.32073From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.37263From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.716From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
3.16897From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.63372From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.88595From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.0559From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
3.46347From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000631.03436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.21478From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1.73869From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.90769From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.38042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
3.17021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.05956From_analysisRNASeq.briggsae.WBls:0000063.control_median
2.14798From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.34941From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001012.38042From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.42963From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.31253From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.3236From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
OrthologWBGene00164169Caenorhabditis brenneriFrom_analysisWormBase-Compara
CBOVI.g5808Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g10246Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6137Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g9573Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15194Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g22373Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15936Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1808Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g2670Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g12952Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g19716Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00587.g12533Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_10739.g22835Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-R02F2.8Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold628.g7479Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00580.g13111Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_13549Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010552Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05852Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11585Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11586Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_30129800Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00019837Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00055670Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00125563Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00219125Caenorhabditis japonicaFrom_analysisWormBase-Compara
chrIII_pilon.g7722Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00286618Trichuris murisFrom_analysisWormBase-Compara
WBGene00290247Trichuris murisFrom_analysisWormBase-Compara
WBGene00290249Trichuris murisFrom_analysisWormBase-Compara
WBGene00290965Trichuris murisFrom_analysisWormBase-Compara
WBGene00301830Trichuris murisFrom_analysisWormBase-Compara
WBGene00301832Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00024486Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00026376Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027719Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027720Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028330Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029054Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029207Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029867Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031170Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031320Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032337Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033402Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033950Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039081Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040749Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042435Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Amino acid transporter, transmembrane domain and Transmembrane amino acid transporter protein. Is an ortholog of C. elegans R02F2.8.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG30197
Corresponding_transcriptCBG30197.1
Other_sequenceNBC09608_1
NB09881
Experimental_infoExpr_patternExpr1051009
Microarray_resultsGPL8303_CB6_WBGene00027719_A
GPL8303_CB6_WBGene00027719_B
GPL8303_CB6_WBGene00027727_A
GPL8303_CB6_WBGene00027727_B
GPL14143_CBG05207_1180-1239_0.919_12_B
GPL14143_CBG05207_1399-1458_0.946_4_A
GPL14143_CBG05207_1477-1536_0.837_63_C
MethodGene