WormBase Tree Display for Gene: WBGene00004729

WBGene00004729 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 2
    Name: CGC_name: sax-3 Person_evidence: WBPerson42
      Sequence_name: ZK377.2
      Molecular_name: ZK377.2a
        ZK377.2a.1
        CE25688
        ZK377.2b
        CE31267
        ZK377.2b.1
      Other_name: CELE_ZK377.2 Accession_evidence: NDB BX284606
      Public_name: sax-3
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 02 Mar 2018 11:09:16 WBPerson4025 Event: Split_into: WBGene00303098
      Split_into: WBGene00303098
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sax
    Allele (171)
    Legacy_information: [Zallen JA] ky123 recessive, homozygotes exhibit aberrant anterior position of nerve ring, many ring axons misrouted, ventral nerve cord neurons often misrouted, cross midline. Encodes three isoforms, longest 1273 aa with 5 Ig repeats, 3 FNIII repeats, TM domain, large cytoplasmic domain. ky123 deletes signal sequence and first exon, probable null. Predicted gene ZK377.3 + ZK377.2
    Strain (11)
    RNASeq_FPKM (74)
    GO_annotation (14)
    Ortholog: WBGene00034790 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00051982 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00148619 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00128991 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00104171 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00227726 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g2329 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12021 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g3884 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g10471 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g5898 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g8996 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g5061 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g9460 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g25465 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16259 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00024.g1476 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_09429.g22059 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-sax-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_X.g23886 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g18177 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00313.g9231 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_00818.g15761 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_00829 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_00830 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_024104 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12222 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12223 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g8691 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0269800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g18763 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00242200 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00267281 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00302741 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0041097 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
      FB:FBgn0005631 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      FB:FBgn0002543 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            PhylomeDB
      ZFIN:ZDB-GENE-000209-3 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-000209-4 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-001019-1 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1874 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      HGNC:10249 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      HGNC:10250 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      HGNC:13433 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      MGI:1343102 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            SonicParanoid
      MGI:1274781 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            SonicParanoid
      MGI:1890110 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      RGD:61941 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      RGD:620167 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      RGD:1311018 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            SonicParanoid
    Paralog (22)
    Structured_description: Concise_description: sax-3 encodes, by alternative splicing, two isoforms of an ortholog of Drosophila ROUNDABOUT, ROBO3, and LEAK, and of human ROBO1, ROBO2 (OMIM:602431, mutated in vesicoureteral reflux), and ROBO3 (OMIM:608630, mutated in horizontal gaze palsy with progressive scoliosis); in larval hermaphrodites, SAX-3 is required to confine migrating sex myoblasts to the ventral muscle quadrants during their migration through the body and for multiple aspects of sensory, motor, and interneuron axon guidance. Paper_evidence: WBPaper00003665
            WBPaper00004362
          Curator_confirmed: WBPerson1843
            WBPerson567
          Date_last_updated: 24 Jan 2008 00:00:00
      Automated_description: Enables axon guidance receptor activity. Involved in generation of neurons and regulation of sensory neuron axon guidance. Located in plasma membrane. Expressed in several structures, including QR.a; QR.p; body wall musculature; neuroblasts; and neurons. Human ortholog(s) of this gene implicated in several diseases, including autosomal recessive congenital nystagmus; hematologic cancer (multiple); and myositis (multiple). Is an ortholog of human ROBO1 (roundabout guidance receptor 1); ROBO2 (roundabout guidance receptor 2); and ROBO3 (roundabout guidance receptor 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model (11)
  Molecular_info: Corresponding_CDS: ZK377.2a
      ZK377.2b
    Corresponding_CDS_history: ZK377.2c:wp264
    Corresponding_transcript: ZK377.2a.1
      ZK377.2b.1
    Other_sequence (32)
    Associated_feature (39)
  Experimental_info: RNAi_result: WBRNAi00086088 Inferred_automatically: RNAi_primary
      WBRNAi00086133 Inferred_automatically: RNAi_primary
      WBRNAi00009468 Inferred_automatically: RNAi_primary
      WBRNAi00009467 Inferred_automatically: RNAi_primary
      WBRNAi00067130 Inferred_automatically: RNAi_primary
      WBRNAi00059385 Inferred_automatically: RNAi_primary
    Expr_pattern (17)
    Drives_construct: WBCnstr00001914
      WBCnstr00003185
      WBCnstr00006455
      WBCnstr00009445
      WBCnstr00012503
      WBCnstr00016209
      WBCnstr00035424
      WBCnstr00039977
      WBCnstr00041184
    Construct_product (15)
    Microarray_results (28)
    Expression_cluster (134)
    Interaction (262)
    Anatomy_function: WBbtf0177
  Map_info: Map: X Position: -10.3398 Error: 0.007528
    Well_ordered
    Positive: Inside_rearr: mnDp57
      Positive_clone: R06A1
        ZK377 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 3695
        3696
        4758
      Pos_neg_data: 9401
  Reference: WBPaper00002991
    WBPaper00002997
    WBPaper00003665
    WBPaper00003674
    WBPaper00003760
    WBPaper00003949
    WBPaper00004362
    WBPaper00004695
    WBPaper00004900
    WBPaper00005236
    WBPaper00005237
    WBPaper00005251
    WBPaper00005544
    WBPaper00005719
    WBPaper00005760
    WBPaper00006025
    WBPaper00006052
    WBPaper00006185
    WBPaper00006288
    WBPaper00006471
    WBPaper00010168
    WBPaper00011128
    WBPaper00012380
    WBPaper00013450
    WBPaper00015626
    WBPaper00015717
    WBPaper00016704
    WBPaper00017099
    WBPaper00017383
    WBPaper00017429
    WBPaper00017433
    WBPaper00017704
    WBPaper00017711
    WBPaper00017712
    WBPaper00018333
    WBPaper00018335
    WBPaper00018572
    WBPaper00018582
    WBPaper00018588
    WBPaper00018942
    WBPaper00019306
    WBPaper00019311
    WBPaper00022845
    WBPaper00022847
    WBPaper00023013
    WBPaper00023085
    WBPaper00023161
    WBPaper00023199
    WBPaper00023310
    WBPaper00023315
    WBPaper00023401
    WBPaper00023980
    WBPaper00024140
    WBPaper00024195
    WBPaper00024484
    WBPaper00024524
    WBPaper00024525
    WBPaper00024722
    WBPaper00024939
    WBPaper00026115
    WBPaper00026148
    WBPaper00026343
    WBPaper00026416
    WBPaper00026439
    WBPaper00026680
    WBPaper00026825
    WBPaper00026845
    WBPaper00026866
    WBPaper00027119
    WBPaper00027206
    WBPaper00027335
    WBPaper00027618
    WBPaper00027646
    WBPaper00028085
    WBPaper00028566
    WBPaper00029024
    WBPaper00029052
    WBPaper00029053
    WBPaper00030317
    WBPaper00031043
    WBPaper00031067
    WBPaper00031543
    WBPaper00031651
    WBPaper00031671
    WBPaper00031828
    WBPaper00032413
    WBPaper00032446
    WBPaper00032941
    WBPaper00033533
    WBPaper00034526
    WBPaper00035405
    WBPaper00036313
    WBPaper00037014
    WBPaper00037766
    WBPaper00038491
    WBPaper00038504
    WBPaper00038663
    WBPaper00038670
    WBPaper00039166
    WBPaper00039177
    WBPaper00039204
    WBPaper00040041
    WBPaper00040048
    WBPaper00040235
    WBPaper00042082
    WBPaper00042510
    WBPaper00042766
    WBPaper00042977
    WBPaper00043290
    WBPaper00043374
    WBPaper00043453
    WBPaper00044158
    WBPaper00045899
    WBPaper00045955
    WBPaper00046690
    WBPaper00047484
    WBPaper00047772
    WBPaper00047944
    WBPaper00047958
    WBPaper00048281
    WBPaper00050480
    WBPaper00051142
    WBPaper00051935
    WBPaper00053739
    WBPaper00054187
    WBPaper00055090
    WBPaper00055566
    WBPaper00055911
    WBPaper00056066
    WBPaper00056135
    WBPaper00056294
    WBPaper00056384
    WBPaper00056692
    WBPaper00056744
    WBPaper00060014
    WBPaper00060641
    WBPaper00061219
    WBPaper00063298
    WBPaper00063743
    WBPaper00064099
    WBPaper00064636
    WBPaper00064805
    WBPaper00065184
  Remark: Inferred from Zallen et al. (1998)
    2 predicted genes (see phenotype) have been merged. [sdm 05/00]
  Method: Gene