Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00029573

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00029573SMapS_parentSequencecb25.fpc0829
IdentityVersion4
NameCGC_nameCbr-atrn-1From_analysisInferred_from_orthology
Sequence_nameCBG07577
Molecular_nameCBG07577
CBG07577.1
CBP07689
Other_nameCBG_07577Accession_evidenceNDBHE601041
Cbr-tag-53
Public_nameCbr-atrn-1
DB_infoDatabaseNDBlocus_tagCBG_07577
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-tag-53
303 Jul 2018 11:45:27WBPerson1983Name_changeCGC_nameRetired non-elegans tag gene names
408 Feb 2019 15:42:26WBPerson1983Name_changeCGC_nameCbr-atrn-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classatrn
AlleleWBVar00008342
RNASeq_FPKMWBls:000000214.476From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
17.3514From_analysisRNASeq.briggsae.WBls:0000002.control_mean
17.8271From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
19.7512From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
15.085From_analysisRNASeq.briggsae.WBls:0000002.control_mean
16.1516From_analysisRNASeq.briggsae.WBls:0000002.control_median
8.28573From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000341.2407From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
45.6866From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
50.1324From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
39.2064From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
43.5265From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000457.3096From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
61.5307From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
65.7518From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
55.2243From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
59.523From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
59.5708From_analysisRNASeq.briggsae.WBls:0000004.control_mean
60.0454From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002714.717From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.75018From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
32.8614From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
8.53954From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
18.1508From_analysisRNASeq.briggsae.WBls:0000027.control_mean
18.4957From_analysisRNASeq.briggsae.WBls:0000027.control_median
28.4519From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003536.3746From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003819.3739From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
21.0117From_analysisRNASeq.briggsae.WBls:0000038.control_mean
21.5855From_analysisRNASeq.briggsae.WBls:0000038.control_median
23.7971From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
33.0586From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
7.81702From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004112.6928From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
7.66174From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
8.02472From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
8.20527From_analysisRNASeq.briggsae.WBls:0000041.control_median
8.38581From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
9.19127From_analysisRNASeq.briggsae.WBls:0000041.control_mean
8.21608From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
8.30095From_analysisRNASeq.briggsae.WBls:0000041.control_median
9.14304From_analysisRNASeq.briggsae.WBls:0000041.control_mean
9.87707From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
3.87117From_analysisRNASeq.briggsae.WBls:0000063.control_mean
4.23145From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
4.69214From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
4.97276From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
5.45949From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
4.47831From_analysisRNASeq.briggsae.WBls:0000063.control_mean
4.83245From_analysisRNASeq.briggsae.WBls:0000063.control_median
7.51403From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010117.8271From_analysisRNASeq.briggsae.total_over_all_stages.control_median
19.83From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
18.6005From_analysisRNASeq.briggsae.total_over_all_stages.control_median
22.4057From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (30)
ParalogWBGene00027029Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027093Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032168Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032203Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032251Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032318Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039108Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042278Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042473Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Galactose oxidase/kelch, beta-propeller; Kelch-type beta propeller; Spermadhesin, CUB domain superfamily; Galactose oxidase, central domain; Kelch motif; Laminin-type EGF domain; Kelch repeat type 1; EGF-like domain; CUB domain; Laminin EGF domain; PSI domain; and Plexin repeat. Is an ortholog of C. elegans atrn-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG07577
Corresponding_CDS_historyCBG07577:bp194
CBG07577:bp255
Corresponding_transcriptCBG07577.1
Other_sequence (37)
Experimental_infoExpr_patternExpr1070121
Microarray_resultsGPL8303_CB6_WBGene00029573_A
GPL8303_CB6_WBGene00029573_B
GPL14143_CBG07577_1282-1341_0.812_1_C
GPL14143_CBG07577_2378-2437_0.778_53_B
GPL14143_CBG07577_3129-3188_0.744_129_A
MethodGene