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WormBase Tree Display for Gene: WBGene00042473

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Name Class

WBGene00042473SMapS_parentSequencecb25.NA_141
IdentityVersion2
NameCGC_nameCbr-lam-3From_analysisInferred_from_orthology
Sequence_nameCBG24338
Molecular_nameCBG24338
CBG24338.1
CBP12857
Other_nameCBG_24338Accession_evidenceNDBHE601377
Public_nameCbr-lam-3
DB_infoDatabaseNDBlocus_tagCBG_24338
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:12WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lam-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlam
RNASeq_FPKMWBls:00000020.70677From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.50065From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.80461From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.99058From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.705821From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.25569From_analysisRNASeq.briggsae.WBls:0000002.control_median
1.30194From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000034.54671From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
6.65286From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
8.75902From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
3.74684From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
5.68419From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000430.7639From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
31.2883From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
31.8128From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
28.7984From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
30.2453From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
31.8817From_analysisRNASeq.briggsae.WBls:0000004.control_mean
37.7879From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.023894From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.099633From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.324093From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0.848753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.211545From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.323457From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
0.323934From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000353.10941From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.679447From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.04366From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
1.79322From_analysisRNASeq.briggsae.WBls:0000038.control_median
2.00639From_analysisRNASeq.briggsae.WBls:0000038.control_mean
2.54278From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.75968From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.822248From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.918818From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.20252From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.21191From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.505From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.56403From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.453242From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
1.02422From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.06549From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.12962From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.383857From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.426427From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.462805From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.52396From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.590144From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.756569From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.526474From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.694155From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.54513From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001010.822248From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.51215From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.883785From_analysisRNASeq.briggsae.total_over_all_stages.control_median
5.43653From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (32)
ParalogWBGene00027029Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027093Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029573Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032168Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032203Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032251Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032318Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039108Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042278Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Laminin G domain; Laminin, N-terminal; Laminin IV; Laminin-type EGF domain; Concanavalin A-like lectin/glucanase domain superfamily; EGF-like domain; Laminin EGF domain; Laminin N-terminal (Domain VI); and Laminin B (Domain IV). Is an ortholog of C. elegans lam-3.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG24338
Corresponding_CDS_historyCBG24338:bp194
CBG24338:bp255
Corresponding_transcriptCBG24338.1
Other_sequence (23)
Experimental_infoExpr_patternExpr1051344
Microarray_resultsGPL8303_CB6_WBGene00042473_A
GPL8303_CB6_WBGene00042473_B
GPL8303_CB6_WBGene00042473_C
GPL8303_CB6_WBGene00042473_D
GPL8303_CB6_WBGene00042473_E
GPL14143_CBG24338_1482-1541_0.814_108_B
GPL14143_CBG24338_2584-2643_0.804_132_C
GPL14143_CBG24338_3301-3360_0.798_160_A
MethodGene