WormBase Tree Display for Gene: WBGene00036641

WBGene00036641 SMap: S_parent: Sequence: cb25.fpc4044c
  Identity: Version: 2
    Name: CGC_name: Cbr-cng-2 From_analysis: Inferred_from_orthology
      Sequence_name: CBG16807
      Molecular_name: CBG16807
        CBG16807.1
        CBP46982
      Other_name: CBG_16807 Accession_evidence: NDB HE600944
      Public_name: Cbr-cng-2
    DB_info: Database: NDB locus_tag CBG_16807
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:06 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Cbr-cng-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cng
    Allele: WBVar00021562
    RNASeq_FPKM: WBls:0000002 0.214185 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0.306261 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        0.354122 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.541921 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.211115 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        0.260223 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        0.31837 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.411647 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.590431 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.769215 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0.589865 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        0.590242 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 1.7888 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        1.84993 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        1.91105 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0.986703 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        1.54039 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        1.57467 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        1.64642 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 0.149536 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        0.473645 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        1.2714 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.318747 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        0.477223 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.487957 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0.394116 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.105433 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        0.162816 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        0.167618 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.229804 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0.316029 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 0.153665 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.254823 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.279159 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.296546 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.303495 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.474202 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.367062 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.373756 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.444016 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        0.572173 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 0.054963 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.103836 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0.170978 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        0 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        0.045802 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 0.303495 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.513385 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0.355072 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.562285 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00140053
      00140054
      00140055
      00140056
    Ortholog: WBGene00000487 Caenorhabditis elegans From_analysis: OrthoMCL
      WBGene00022295 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00068887 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00131004 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00141301 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      CBOVI.g8797 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g16122 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g6191 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g14128 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g3399 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22316 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP32.g12976 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g6156 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g17066 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6048 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00092.g4117 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_IV.g15981 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10752 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00428.g11236 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_02636.g27333 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_15568 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_016070 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10794 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_40038200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g9759 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00028880 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029133 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032686 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033375 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039233 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041056 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00045213 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable monoatomic ion channel activity. Predicted to be involved in monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans cng-2. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG16807
    Corresponding_CDS_history: CBG16807:bp255
    Corresponding_transcript: CBG16807.1
    Other_sequence (16)
  Experimental_info: Expr_pattern: Expr1066691
    Microarray_results: GPL8303_CB6_WBGene00036641_A
      GPL8303_CB6_WBGene00036641_B
      GPL14143_CBG16807_1418-1477_0.794_5_B
      GPL14143_CBG16807_1546-1605_0.761_44_C
      GPL14143_CBG16807_1629-1688_0.766_37_A
  Method: Gene