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WormBase Tree Display for Gene: WBGene00039108

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Name Class

WBGene00039108SMapS_parentSequencecb25.fpc4152
IdentityVersion2
NameCGC_nameCbr-lam-1From_analysisInferred_from_orthology
Sequence_nameCBG20003
Molecular_nameCBG20003
CBG20003.1
CBP48822
Other_nameCBG_20003Accession_evidenceNDBHE601481
Public_nameCbr-lam-1
DB_infoDatabaseNDBlocus_tagCBG_20003
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lam-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlam
RNASeq_FPKMWBls:000000211.2022From_analysisRNASeq.briggsae.WBls:0000002.control_mean
19.1666From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
5.98807From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
8.45201From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2.65494From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
7.22004From_analysisRNASeq.briggsae.WBls:0000002.control_median
9.0654From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000324.3956From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
24.4048From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
24.414From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
19.687From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
22.8322From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000464.2936From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
65.7443From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
67.195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
64.8943From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
65.9613From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
69.904From_analysisRNASeq.briggsae.WBls:0000004.control_mean
87.1757From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002714.6466From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
16.4631From_analysisRNASeq.briggsae.WBls:0000027.control_mean
29.4158From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.32697From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
18.0714From_analysisRNASeq.briggsae.WBls:0000027.control_mean
18.7714From_analysisRNASeq.briggsae.WBls:0000027.control_median
22.8962From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003529.0429From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.9576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
16.7742From_analysisRNASeq.briggsae.WBls:0000038.control_mean
17.1628From_analysisRNASeq.briggsae.WBls:0000038.control_median
22.3679From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
22.8047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
9.96645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004111.373From_analysisRNASeq.briggsae.WBls:0000041.control_mean
12.3126From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
12.4424From_analysisRNASeq.briggsae.WBls:0000041.control_median
12.5723From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
12.6461From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
7.96118From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
10.2182From_analysisRNASeq.briggsae.WBls:0000041.control_mean
11.3735From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
11.8431From_analysisRNASeq.briggsae.WBls:0000041.control_median
4.44377From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006313.1021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
13.3807From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
14.8659From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
15.0187From_analysisRNASeq.briggsae.WBls:0000063.control_mean
15.2074From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
18.5373From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
13.8041From_analysisRNASeq.briggsae.WBls:0000063.control_mean
14.1233From_analysisRNASeq.briggsae.WBls:0000063.control_median
7.7314From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010113.9483From_analysisRNASeq.briggsae.total_over_all_stages.control_median
18.7992From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
14.2975From_analysisRNASeq.briggsae.total_over_all_stages.control_median
21.8946From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
OrthologWBGene00002247Caenorhabditis elegansFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00073297Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WBGene00153498Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00143869Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
WBGene00125021Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00064034Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00098403Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
CSP21.g4786Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g9639Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g6472Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g8045Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g24796Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1663Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g3738Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9400Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g16935Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g5575Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1132Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00015.g1026Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00834.g14478Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_06086.g20049Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_23666.g27057Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lam-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold41.g208Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00372.g10329Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11857Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_026240Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13333Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g15719Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40337100Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00226424Brugia malayiFrom_analysisWormBase-Compara
chrIV_pilon.g10367Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00068464Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00240803Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00296107Trichuris murisFrom_analysisWormBase-Compara
WBGene00301698Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00027029Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027093Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029573Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032168Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032203Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032251Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032318Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042278Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042473Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Galactose-binding-like domain superfamily; Laminin, N-terminal; Laminin-type EGF domain; EGF-like domain; Laminin EGF domain; and Laminin N-terminal (Domain VI). Is an ortholog of C. elegans lam-1. In C. elegans, lam-1 is involved in pharynx development and positive regulation of locomotion.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20003
Corresponding_CDS_historyCBG20003:bp194
CBG20003:bp265
Corresponding_transcriptCBG20003.1
Other_sequence (15)
Experimental_infoExpr_patternExpr1054020
Expr1067219
Microarray_resultsGPL8303_CB6_WBGene00039095_A
GPL8303_CB6_WBGene00039108_A
GPL14143_CBG19981_361-420_0.946_6_C
GPL14143_CBG19981_489-548_0.950_4_B
GPL14143_CBG19981_595-654_0.970_1_A
GPL14143_CBG20003_3009-3068_0.922_15_B
GPL14143_CBG20003_3013-3072_0.918_17_C
GPL14143_CBG20003_3017-3076_0.929_10_A
MethodGene