WormBase Tree Display for Expression_cluster: WBPaper00038060:SUMO-1_upregulated

WBPaper00038060:SUMO-1_upregulated Description: Genes showing > 1.5-fold up-regulated expression (p<0.001) both in aex-3::His-SUMO-1 and myo-4::His-SUMO-1 C. elegans.
  Species: Caenorhabditis elegans
  Algorithm: The Linear Models for Microarray Data (Limma) package using linear model fitting for statistical testing with empirical Bayes variance smoothing procedure were applied to detection of differentially expressed genes in aex-3::His-SUMO-1 and myo-4::His-SUMO-1 nematodes when compared to N2. The obtained p values were corrected for multiple testing using Benjamini and Hochberg false discovery rate procedure. For downstream analysis, genes with FDR corrected p < 0.001 were used including 1,805 probe sets from aex-3::His-SUMO-1 versus N2 comparison (899 under- and 906 overexpressed) and 1,342 probe sets from myo-4::His-SUMO-1 versus N2 comparison (774 under and 568 overexpressed).
  Reference: WBPaper00038060
  Microarray_results: 177785_s_at Fold change: 4.591
    176332_s_at Fold change: 2.851
    178392_s_at Fold change: 2.839
    181288_at Fold change: 2.577
    174487_s_at Fold change: 2.502
    177606_at Fold change: 2.343
    174109_at Fold change: 2.309
    187541_at Fold change: 2.301
    177692_at Fold change: 2.3
    174782_s_at Fold change: 2.232
    192553_at Fold change: 2.222
    177973_at Fold change: 2.216
    187265_at Fold change: 2.169
    191883_at Fold change: 2.141
    192200_at Fold change: 2.091
    181769_s_at Fold change: 2.08
    190187_at Fold change: 2.079
    186687_at Fold change: 2.067
    175636_at Fold change: 2.061
    192759_at Fold change: 2.059
    171724_x_at Fold change: 2.031
    173914_s_at Fold change: 2.024
    187154_at Fold change: 2.014
    173258_s_at Fold change: 2.013
    187336_at Fold change: 2.013
    191255_s_at Fold change: 2.007
    194076_s_at Fold change: 1.996
    188489_s_at Fold change: 1.992
    173588_s_at Fold change: 1.991
    188406_s_at Fold change: 1.969
    180783_at Fold change: 1.963
    176052_at Fold change: 1.956
    181679_s_at Fold change: 1.953
    193646_s_at Fold change: 1.943
    193837_at Fold change: 1.928
    189641_at Fold change: 1.924
    187213_at Fold change: 1.919
    173753_s_at Fold change: 1.913
    187383_s_at Fold change: 1.913
    173513_s_at Fold change: 1.912
    180278_s_at Fold change: 1.909
    192995_at Fold change: 1.909
    184448_at Fold change: 1.905
    181499_s_at Fold change: 1.903
    187877_s_at Fold change: 1.898
    180067_at Fold change: 1.896
    183622_s_at Fold change: 1.896
    188387_at Fold change: 1.892
    171979_x_at Fold change: 1.889
    183155_at Fold change: 1.884
    173171_s_at Fold change: 1.871
    177760_at Fold change: 1.871
    177571_at Fold change: 1.864
    192287_at Fold change: 1.863
    190188_s_at Fold change: 1.857
    184252_at Fold change: 1.848
    175090_at Fold change: 1.847
    193191_s_at Fold change: 1.844
    183054_s_at Fold change: 1.842
    193289_at Fold change: 1.839
    181453_at Fold change: 1.838
    193342_s_at Fold change: 1.838
    182514_at Fold change: 1.835
    186952_at Fold change: 1.83
    193816_at Fold change: 1.826
    181304_s_at Fold change: 1.822
    185314_s_at Fold change: 1.822
    187939_at Fold change: 1.822
    193710_at Fold change: 1.814
    193939_at Fold change: 1.814
    174155_s_at Fold change: 1.81
    177402_s_at Fold change: 1.81
    192382_s_at Fold change: 1.81
    192471_at Fold change: 1.806
    190773_s_at Fold change: 1.803
    187366_s_at Fold change: 1.802
    184336_s_at Fold change: 1.798
    194190_x_at Fold change: 1.798
    188130_s_at Fold change: 1.793
    173791_at Fold change: 1.792
    186851_at Fold change: 1.792
    192644_at Fold change: 1.79
    176736_at Fold change: 1.787
    191593_s_at Fold change: 1.787
    173185_s_at Fold change: 1.786
    177498_at Fold change: 1.786
    176744_s_at Fold change: 1.782
    179032_at Fold change: 1.781
    185208_s_at Fold change: 1.778
    192371_s_at Fold change: 1.774
    180065_s_at Fold change: 1.771
    193860_s_at Fold change: 1.77
    191738_at Fold change: 1.768
    185845_at Fold change: 1.764
    181834_at Fold change: 1.761
    173530_at Fold change: 1.76
    187389_s_at Fold change: 1.757
    177393_at Fold change: 1.755
    188611_s_at Fold change: 1.753
    190047_s_at Fold change: 1.749
    171769_x_at Fold change: 1.747
    173316_s_at Fold change: 1.745
    192534_at Fold change: 1.745
    193951_at Fold change: 1.741
    181423_at Fold change: 1.74
    192018_at Fold change: 1.735
    188950_s_at Fold change: 1.731
    176043_at Fold change: 1.728
    188218_s_at Fold change: 1.727
    190779_s_at Fold change: 1.727
    191889_s_at Fold change: 1.726
    191058_at Fold change: 1.725
    185761_s_at Fold change: 1.724
    190197_s_at Fold change: 1.724
    188097_at Fold change: 1.723
    183364_at Fold change: 1.721
    187637_at Fold change: 1.721
    174028_at Fold change: 1.718
    175430_s_at Fold change: 1.718
    192795_at Fold change: 1.718
    189582_s_at Fold change: 1.717
    185482_at Fold change: 1.716
    183396_s_at Fold change: 1.713
    185928_s_at Fold change: 1.713
    175834_s_at Fold change: 1.712
    181823_s_at Fold change: 1.711
    192730_at Fold change: 1.71
    174889_s_at Fold change: 1.708
    177994_at Fold change: 1.704
    181868_at Fold change: 1.704
    181213_s_at Fold change: 1.703
    186958_s_at Fold change: 1.7
    192241_at Fold change: 1.697
    185094_at Fold change: 1.696
    192942_s_at Fold change: 1.693
    176820_at Fold change: 1.692
    190820_s_at Fold change: 1.691
    190431_at Fold change: 1.69
    173416_at Fold change: 1.689
    193295_at Fold change: 1.686
    176919_at Fold change: 1.685
    182041_s_at Fold change: 1.685
    176777_at Fold change: 1.678
    184348_at Fold change: 1.678
    178835_s_at Fold change: 1.677
    175154_s_at Fold change: 1.676
    175766_s_at Fold change: 1.676
    187246_s_at Fold change: 1.676
    188080_s_at Fold change: 1.676
    192977_s_at Fold change: 1.676
    183250_at Fold change: 1.675
    182989_at Fold change: 1.671
    194081_at Fold change: 1.671
    182928_s_at Fold change: 1.67
    192150_at Fold change: 1.669
    189396_at Fold change: 1.667
    173670_s_at Fold change: 1.665
    176105_s_at Fold change: 1.665
    186312_at Fold change: 1.663
    188505_at Fold change: 1.661
    174856_at Fold change: 1.659
    175892_at Fold change: 1.659
    192947_s_at Fold change: 1.659
    174466_at Fold change: 1.658
    179898_s_at Fold change: 1.658
    180788_at Fold change: 1.657
    180508_s_at Fold change: 1.656
    173864_at Fold change: 1.655
    174761_at Fold change: 1.652
    182805_s_at Fold change: 1.652
    188951_s_at Fold change: 1.651
    190224_at Fold change: 1.65
    173985_s_at Fold change: 1.649
    191142_s_at Fold change: 1.649
    174939_s_at Fold change: 1.648
    175336_at Fold change: 1.646
    193888_s_at Fold change: 1.644
    194007_at Fold change: 1.644
    174843_at Fold change: 1.643
    182922_s_at Fold change: 1.643
    193706_s_at Fold change: 1.642
    186146_s_at Fold change: 1.641
    190444_s_at Fold change: 1.641
    192352_at Fold change: 1.641
    175729_at Fold change: 1.637
    179359_at Fold change: 1.637
    180173_at Fold change: 1.637
    184287_at Fold change: 1.636
    184930_at Fold change: 1.635
    187948_s_at Fold change: 1.635
    192236_at Fold change: 1.635
    180676_at Fold change: 1.634
    177774_at Fold change: 1.633
    174002_s_at Fold change: 1.632
    182062_at Fold change: 1.632
    190694_s_at Fold change: 1.632
    174124_at Fold change: 1.631
    188903_s_at Fold change: 1.631
    174076_at Fold change: 1.63
    179041_at Fold change: 1.63
    190892_at Fold change: 1.63
    185524_at Fold change: 1.629
    180677_s_at Fold change: 1.628
    191528_s_at Fold change: 1.628
    193374_s_at Fold change: 1.626
    187257_s_at Fold change: 1.62
    174687_at Fold change: 1.619
    174828_at Fold change: 1.619
    179817_at Fold change: 1.617
    173696_at Fold change: 1.616
    178174_s_at Fold change: 1.614
    188001_s_at Fold change: 1.613
    186879_s_at Fold change: 1.612
    193992_s_at Fold change: 1.612
    181311_s_at Fold change: 1.61
    185894_s_at Fold change: 1.606
    190143_s_at Fold change: 1.605
    187905_at Fold change: 1.604
    188616_s_at Fold change: 1.604
    178942_s_at Fold change: 1.603
    175042_at Fold change: 1.601
    191948_s_at Fold change: 1.6
    192335_at Fold change: 1.6
    173651_at Fold change: 1.599
    187532_s_at Fold change: 1.597
    177340_at Fold change: 1.594
    178231_s_at Fold change: 1.594
    183830_at Fold change: 1.593
    190785_s_at Fold change: 1.593
    174942_at Fold change: 1.587
    186871_at Fold change: 1.586
    184995_s_at Fold change: 1.585
    186098_s_at Fold change: 1.582
    178333_at Fold change: 1.581
    181605_at Fold change: 1.581
    188136_at Fold change: 1.581
    184293_at Fold change: 1.58
    189273_at Fold change: 1.58
    175038_at Fold change: 1.579
    179946_s_at Fold change: 1.579
    189360_s_at Fold change: 1.579
    188733_at Fold change: 1.578
    173716_at Fold change: 1.577
    185836_s_at Fold change: 1.577
    187152_at Fold change: 1.577
    176415_at Fold change: 1.576
    188729_at Fold change: 1.576
    173135_s_at Fold change: 1.574
    184644_at Fold change: 1.572
    173976_at Fold change: 1.571
    174151_at Fold change: 1.571
    191368_s_at Fold change: 1.571
    183659_at Fold change: 1.57
    176022_at Fold change: 1.566
    190588_s_at Fold change: 1.566
    190140_at Fold change: 1.565
    188101_at Fold change: 1.564
    173302_at Fold change: 1.563
    182880_at Fold change: 1.563
    173555_at Fold change: 1.562
    192724_at Fold change: 1.562
    175037_at Fold change: 1.559
    187675_s_at Fold change: 1.559
    192457_s_at Fold change: 1.558
    192550_at Fold change: 1.558
    174523_s_at Fold change: 1.556
    184061_at Fold change: 1.556
    172072_x_at Fold change: 1.555
    174703_at Fold change: 1.555
    179897_s_at Fold change: 1.555
    184413_at Fold change: 1.555
    186707_at Fold change: 1.555
    192217_s_at Fold change: 1.555
    173299_s_at Fold change: 1.554
    174367_at Fold change: 1.554
    173141_s_at Fold change: 1.552
    174001_s_at Fold change: 1.552
    175296_at Fold change: 1.552
    186685_at Fold change: 1.551
    187463_at Fold change: 1.551
    193791_s_at Fold change: 1.551
    180778_at Fold change: 1.55
    190928_s_at Fold change: 1.548
    176520_at Fold change: 1.547
    182213_at Fold change: 1.546
    186677_s_at Fold change: 1.546
    186766_at Fold change: 1.546
    190186_s_at Fold change: 1.546
    182018_at Fold change: 1.545
    189050_at Fold change: 1.545
    192449_at Fold change: 1.542
    187699_at Fold change: 1.541
    188557_at Fold change: 1.54
    184231_at Fold change: 1.539
    189798_s_at Fold change: 1.538
    187471_at Fold change: 1.537
    192793_s_at Fold change: 1.537
    189009_s_at Fold change: 1.536
    175066_at Fold change: 1.535
    189555_at Fold change: 1.535
    187217_at Fold change: 1.534
    187596_at Fold change: 1.534
    180127_at Fold change: 1.533
    175511_at Fold change: 1.531
    183704_at Fold change: 1.531
    188069_s_at Fold change: 1.531
    182136_at Fold change: 1.528
    171987_x_at Fold change: 1.526
    181880_at Fold change: 1.525
    184245_at Fold change: 1.525
    189129_at Fold change: 1.525
    193901_s_at Fold change: 1.524
    182644_s_at Fold change: 1.523
    177372_s_at Fold change: 1.522
    190505_at Fold change: 1.522
    185306_at Fold change: 1.521
    191781_s_at Fold change: 1.52
    190619_at Fold change: 1.518
    173077_s_at Fold change: 1.517
    176607_s_at Fold change: 1.516
    181979_at Fold change: 1.515
    187773_at Fold change: 1.515
    179259_at Fold change: 1.514
    183878_at Fold change: 1.514
    193921_s_at Fold change: 1.514
    180821_at Fold change: 1.512
    192757_at Fold change: 1.511
    178415_s_at Fold change: 1.51
    189462_s_at Fold change: 1.51
    193794_s_at Fold change: 1.51
    178733_at Fold change: 1.509
    178879_at Fold change: 1.508
    182131_s_at Fold change: 1.507
    190137_s_at Fold change: 1.507
    176783_s_at Fold change: 1.506
    190433_s_at Fold change: 1.506
    181972_at Fold change: 1.505
    188802_at Fold change: 1.503
    177183_s_at Fold change: 1.501
    179390_s_at Fold change: 1.501
    188803_s_at Fold change: 1.5
  Gene: WBGene00011434
    WBGene00021743
    WBGene00010353
    WBGene00008061
    WBGene00009118
    WBGene00014955
    WBGene00022452
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    WBGene00009668
    WBGene00009254
    WBGene00018852
    WBGene00020936
    WBGene00007464
    WBGene00001692
    WBGene00001031
    WBGene00022245
    WBGene00013217
    WBGene00003214
  Attribute_of: Microarray_experiment: WBPaper00038060:N2_1
      WBPaper00038060:N2_2
      WBPaper00038060:N2_3
      WBPaper00038060:aex-3p-his-SUMO-1-JS62_1
      WBPaper00038060:aex-3p-his-SUMO-1-JS62_2
      WBPaper00038060:aex-3p-his-SUMO-1-JS62_3
      WBPaper00038060:myo-4p-his-SUMO-1-JS63_1
      WBPaper00038060:myo-4p-his-SUMO-1-JS63_2
      WBPaper00038060:myo-4p-his-SUMO-1-JS63_3
  Regulation: Regulated_by_gene: HGNC:12502
  Associated_with: Life_stage: WBls:0000024