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WormBase Tree Display for Gene: WBGene00020048

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Name Class

WBGene00020048SMapS_parentSequenceR13A5
IdentityVersion2
NameCGC_namelgc-12Paper_evidenceWBPaper00029376
Person_evidenceWBPerson1430
Sequence_nameR13A5.4
Molecular_nameR13A5.4
R13A5.4.1
CE45150
Other_nameCELE_R13A5.4Accession_evidenceNDBBX284603
Public_namelgc-12
DB_infoDatabaseAceViewgene3I653
WormQTLgeneWBGene00020048
WormFluxgeneWBGene00020048
NDBlocus_tagCELE_R13A5.4
PanthergeneCAEEL|WormBase=WBGene00020048|UniProtKB=Q95Y94
familyPTHR18945
NCBIgene187855
RefSeqproteinNM_066255.4
TrEMBLUniProtAccQ95Y94
UniProt_GCRPUniProtAccQ95Y94
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:02WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
218 May 2007 16:58:23WBPerson2970Name_changeCGC_namelgc-12
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlgc
Allele (30)
StrainWBStrain00037521
RNASeq_FPKM (74)
GO_annotation (17)
Ortholog (18)
ParalogWBGene00000042Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000043Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000044Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000045Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000046Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000047Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000048Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000049Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000050Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000051Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000053Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000054Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000055Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000056Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000057Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000058Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000059Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000060Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000061Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00000062Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000232Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000233Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000845Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000951Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000955Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001133Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001373Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001512Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001586Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001587Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001588Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001591Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001592Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001593Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001594Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00002974Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00002975Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003386Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006765Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006774Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006784Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006797Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00007191Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007594Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007903Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008022Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008076Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008223Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008280Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008551Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008997Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00009790Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009799Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010275Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010741Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010994Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011354Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011355Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011356Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011358Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011359Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011360Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00012099Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00012857Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00012915Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013300Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013338Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013517Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013534Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00013655Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013746Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00013914Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015412Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00017314Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017375Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00017389Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017399Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017543Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017544Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017580Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00018880Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00019069Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00021981Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00043066Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00022247Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00020836Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022283Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020236Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00045385Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00044301Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020528Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020767Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021146Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022106Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020657Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021437Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020605Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020569Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017483Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00044528Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable excitatory extracellular ligand-gated monoatomic ion channel activity and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in excitatory postsynaptic potential and monoatomic ion transmembrane transport. Predicted to be located in neuron projection and synapse. Expressed in mechanosensory neurons.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSR13A5.4
Corresponding_CDS_historyR13A5.4:wp176
R13A5.4:wp216
Corresponding_transcriptR13A5.4.1
Other_sequencePPC10350_1
Associated_featureWBsf717930
WBsf717931
Experimental_infoRNAi_resultWBRNAi00005520Inferred_automaticallyRNAi_primary
WBRNAi00051891Inferred_automaticallyRNAi_primary
WBRNAi00066354Inferred_automaticallyRNAi_primary
WBRNAi00005880Inferred_automaticallyRNAi_primary
WBRNAi00102735Inferred_automaticallyRNAi_primary
WBRNAi00034917Inferred_automaticallyRNAi_primary
WBRNAi00017819Inferred_automaticallyRNAi_primary
Expr_patternExpr9891
Expr11667
Expr12561
Expr1012239
Expr1155547
Expr2013093
Expr2031325
Drives_constructWBCnstr00009829
WBCnstr00014380
WBCnstr00021617
WBCnstr00025403
Construct_productWBCnstr00025403
Microarray_results (17)
Expression_cluster (87)
InteractionWBInteraction000337690
WBInteraction000385545
Map_infoMapIIIPosition-0.668369Error0.000357
PositivePositive_cloneR13A5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene